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Hmgb1

Manufactured by LifeSpan BioSciences
Sourced in United States

HMGB1 is a highly conserved protein found in the nucleus and cytoplasm of most eukaryotic cells. It functions as a DNA-binding protein that helps facilitate DNA bending and binding of transcription factors.

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7 protocols using hmgb1

1

Nanoparticle Tracking Analysis of nEVs

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nEV size and counts were determined by a nanoparticle tracking system (NTA), NanoSight LM10 instrument (Malvern Instruments, Malvern, UK) with a 405nm laser-equipped sample chamber, as described previously (Tang et al, 2016 (link)). The samples were diluted in PBS to 108-109 particles/mL. Camera shutter speed, camera gain and software detection threshold were manually adjusted for optimal detection and kept consistent during all sample analyses. Each sample was analyzed three times with three recordings of 30 seconds each. The modes were reported for particle sizes due to the highly skewed distributions. The mean of the triplicate recordings was reported for size and concentration. Protein concentrations in nEVs were analyzed using commercial ELISA kits, apoptosis-linked gene 2-interacting protein X (ALIX) (Lifeome-Cusabio, Oceanside, CA), synaptophysin (SYN) (American Research Products, Inc., Waltham, MA), HMGB1 (LifeSpanBioSciences, Inc., Seattle, WA), NFL (MyBioSource, San Diego, CA) and p-T181-tau (Fujirebio US, Malvern, PA). ELISAs were performed per manufacturer’s instructions and normalized to ALIX as previously described (Sun et al, 2019 (link)). All standards and samples were assayed in duplicate. Plates were analyzed using a SpectraMax M5 plate reader and SoftMax v5 software (Molecular Devices, San Jose, CA).
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2

Quantifying ICD-induced Cytokines

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To quantify cytokines after ICD induction, each ICD induced tumor supernatants and DC-conditioned supernatants were collected after restimulation with lipopolysaccharide (LPS, 100 ng mL−1) for 18 h. The concentration of HMGB-1 (Lifespan bioscience, USA), TNF-α, IL-12p70, and IL-10 was measured by ELISA (eBioscience, USA) with manufacturer’s protocol.
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3

VCA Injury Assessment via ELISA and Histology

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Prior to implantation of VCAs, perfusates from cold stored VCAs were collected and levels of creatine kinase (Sigma, USA), and HMGB1 (LifeSpan BioSciences, USA) were measured by ELISA as markers of VCA injury. For histological examination, VCAs were isolated and subsequently fixed, processed to paraffin, and four μm sections stained with Hematoxylin and Eosin (HE) and scored for graft injury from 0-5 using a semiquantitative histology scoring system (26 (link)).
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4

Murine Brain-Dead Donor Lung Transplant

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BD was induced in donor mice with a Fogarty catheter balloon as previously described (10 (link)). Donor animals with refractory hypotensive episodes, defined as mean arterial pressure <50mmHg for a duration of longer than 20 mins, were excluded from the studies, as we have previously described (11 (link)). Nebulization was performed on brain dead donor mice 30 minutes prior to harvest using an in-line nebulizer (EMKA, USA) attached to the inspiratory tubing of the ventilator (Physiosuite, Kent Scientific, USA). Donor left lungs were procured as previously described (28 (link), 29 (link)) and stored for 18hrs in Perfadex® at 4°C prior. Donor left lungs were then prepared for transplantation, and left orthotopic vascularized lung transplants performed utilizing cuff techniques into C57Bl/6 recipient mice, as previously described (28 (link), 30 (link)). Allografts were harvested at 6 hrs or 5 days post-LTx for analysis. To determine the degree of donor lung injury at the end of 18 hrs of cold storage, lungs were flushed with 1ml of normal saline, and perfusates assayed for lactate dehydrogenase (Biovision) and HMGB1 (LifeSpan Biosciences, Inc.) levels via ELISA, according to the manufacturers recommendation.
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5

Bronchoalveolar Lavage Analysis Post Transplant

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Left lung BAL was performed at 6 hrs post transplantation by instilling 3-0.5mL aliquots of ice cold PBS with intermittent aspiration. Fluid was centrifuged, supernatant collected, and ELISA analysis for of albumin (Genway, USA) and HMGB1 (LifeSpan Biosciences, Inc.) performed per manufacturer instructions.
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6

Hippocampal HMGB1, IL1B, and IL4 Quantification

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Hippocampus was sonicated in a mixture containing extraction buffer (Invitrogen; Cat. No. FNN0071) and protease inhibitors (Sigma-Aldrich; Cat. No. P2714). Ice-cold tissue sonicates were centrifuged at 14,000 rpm for 10 min at 4 °C. The supernatant was removed and the total protein concentration for each sample was quantified using the Bradford method. High Mobility Group Box 1 (HMGB1; LifeSpan Biosciences, Inc.; cat. no. LS-F4039), IL1B (R & D Systems; cat. no. RLB00) and IL4 (R & D Systems; cat. no. R4000) protein was measured using a standard colorimetric sandwich ELISA according to the manufacturer's instructions. Protein was quantified as pg/mg total protein.
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7

Quantifying Neuronal and Exosome Markers

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The samples were thawed, vortexed and centrifuged before ELISA analysis. Neuronal markers were quantified using ELISA kits for human neurofilament protein L (NF-L, MyBioSource, San Diego, California, USA) and synaptophysin (SYP, American Research Products-Cusabio, Waltham, Maine, USA). Tetraspanin exosome markers were tested using human CD81 (American Research Products-Cusabio) and CD63 (MyBioSource). Mediators of neuronal dysfunction included high mobility group protein B1 (HMGB1, LifeSpanBioSciences, Inc., Seattle, Washington, USA) and human amyloid beta 42 (Aβ) Ultrasensitive ELISA Kit (Thermo).
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