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128 protocols using fatty acid free bovine serum albumin

1

Linoleic Acid Metabolism in Cell Lines

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IMCD3 cells were seeded at 200,000 cells per well in 6-well
plates and incubated overnight. The following day, cells were washed
twice with 2 mL of pyruvate-free DMEM and media was changed to 2 mL of
pyruvate-free DMEM containing 10 mM linoleic
acid-13C18, 1 mg/mL fatty acid-free bovine
serum albumin (Sigma-Aldrich), penicillin/streptomycin and 2 mM
L-glutamine premixed with 0.1% DMSO ± 1 mM AKB, 200 nM rotenone
± 1 mM AKB, or 30 μM CP-24879. Media was collected for
analysis at 6 and 24 hours. For D5D/D6D activity measurements after
transient knockdown of FADS1 and FADS2in HeLa cells, 0.5 μg of each pRS-shFADSl and pRS-shFADS2 vectors
were transfected using Fugene HD for 24 hours. After transfection, cells
were washed twice with 2 mL of pyruvate-free DMEM and media was changed
to 2 mL of pyruvate-free DMEM containing 10 μM linoleic
acid-13C18, 1 mg/mL fatty acid-free bovine
serum albumin (Sigma-Aldrich) and 2 mM L-glutamine. Media was collected
for analysis at 24 hours.
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2

Measuring Fatty Acid β-Oxidation in Cells

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β-oxidation of fatty acids was measured as previously described65 (link). Briefly, we plated 30 x 104 cells in 6-well plates and 18h later, we incubated the cells with medium supplemented with [9, 10-3H]-palmitate (Hartmann Analytic GmbH, 1 mCi/mL) bound to 10% fatty acid free bovine serum albumin (Sigma). A total of 3.3 μl of [9, 10-3H]-palmitate and 6.7 μl of fatty acid free bovine serum albumin were used per 1 ml of cell culture medium and cultured for 24 h. After 24 h, supernatant was applied to ion-exchange columns (Dowex 1X8–200, Sigma), and tritiated water was recovered by eluting with 0.5 ml of H2O. A 100μl aliquot was then mixed with 100μl of liquid scintillation cocktail and measured the amount of radioactivity released with a Top count NXT liquid scintillation counter (Packard) in 96-well polystyrene plates (Nunc F96 microwell, Thermo). β-oxidation was expressed as counts per minute (CPM) per milligram of protein.
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3

Measuring Fatty Acid β-Oxidation in Cells

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β-oxidation of fatty acids was measured as previously described65 (link). Briefly, we plated 30 x 104 cells in 6-well plates and 18h later, we incubated the cells with medium supplemented with [9, 10-3H]-palmitate (Hartmann Analytic GmbH, 1 mCi/mL) bound to 10% fatty acid free bovine serum albumin (Sigma). A total of 3.3 μl of [9, 10-3H]-palmitate and 6.7 μl of fatty acid free bovine serum albumin were used per 1 ml of cell culture medium and cultured for 24 h. After 24 h, supernatant was applied to ion-exchange columns (Dowex 1X8–200, Sigma), and tritiated water was recovered by eluting with 0.5 ml of H2O. A 100μl aliquot was then mixed with 100μl of liquid scintillation cocktail and measured the amount of radioactivity released with a Top count NXT liquid scintillation counter (Packard) in 96-well polystyrene plates (Nunc F96 microwell, Thermo). β-oxidation was expressed as counts per minute (CPM) per milligram of protein.
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4

Inflammation and Cell Death Signaling Pathways

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Sodium palmitate, N-acetyl-L-cysteine (NAC), and fatty acid-free bovine serum albumin (BSA) were purchased from Sigma-Aldrich (St Louis, MO, USA). We used the following specific antibodies for Western blotting and immunohistochemical analysis: anti-IL-1β and -AIM2 (Abcam, Cambridge, MA, USA); anti-caspase-1 (Cell Signaling Technology, Danvers, MA, USA); anti-NLRP3 (Adipogen, San Diego, CA, USA); and anti-β-actin (Santa Cruz Biotechnologies, Santa Cruz, CA, USA).
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5

Neurochemical Assessment of Biochemical Interactions

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Opipramol (4-[3-(5H-dibenz[b,f]-azepine-5-yl)-propyl]-1-piperazine-ethanol dihydrochloride), haloperidol, risperidone, phenelzine, pargyline, harmine, tyramine, benzylamine, semicarbazide, cytochalasin B, fatty acid-free bovine serum albumin, hydrogen peroxide, horseradish peroxidase, isoprenaline, cytochalasin B, and routinely used chemicals were obtained from Sigma-Aldrich-Merck (St. Quentin Fallavier, France), unless otherwise specified. Amplex Red was provided by InterChim (Montluçon, France). [3H]-2-Deoxyglucose, [14C]-benzylamine, and scintillation cocktail were purchased from PerkinElmer (Boston, MA, USA). Different [14C]-tyramine batches were either from PerkinElmer or Sigma. Olanzapine and ziprazidone were generous gifts from Prof. Renaud de Beaurepaire (Hosp. Paul-Guiraud, Villejuif, France).
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6

Lipid Metabolism Assays with OCs

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The OC compounds trans-nonachlor and oxychlordane were obtained from AccuStandard, Inc. and DDE was obtained from ChemService. Each OC compound was dissolved in dimethylsulfoxide (DMSO) at a 4000× concentration to produce a final DMSO concentration of 0.025% in cell culture treatments. Cell culture media (RPMI-1640) and related components including sodium pyruvate, glutamine, penicillin, streptomycin, insulin, and fatty acid-free bovine serum albumin were obtaining from Sigma-Aldrich. Oil Red O (ORO) and Janus Green (JG) stains were obtaining from Sigma-Aldrich and a stock solution of ORO (3 mg/ml) was made in 100% isopropanol. 4,4-difluoro-5-methyl-4-bora-3a,4a-diaza-s-indacene-3-dodecanoic acid (BODIPY 500/510 C12; BODIPY-FA) for use in extracellular free fatty acid uptake assays was obtained from Life Technologies (ThermoFisher Scientific). Radiolabeled 14C-acetate for de novo lipogenesis assays was purchased from Perkin Elmer. Triglyceride and β-hydroxybutyrate assay kits were purchased from Cayman Chemical.
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7

Adipocyte Differentiation Culture Protocol

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The following were obtained from the respective suppliers: Dulbecco’s modified Eagle medium containing 25 mM HEPES, penicillin G potassium salt, streptomycin sulfate, dexamethasone, fatty acid-free bovine serum albumin, and recombinant human insulin (Sigma-Aldrich Corp., St. Louis, MO, USA); L-ascorbic acid phosphate magnesium salt n-hydrate, 3-isobutyl-1-methylxanthine (IBMX), and Triglyceride E-Test Kits (Wako Pure Chemical Industries Ltd., Osaka, Japan); fetal bovine serum (FBS) (MP Biomedicals, Solon, OH, USA); PGD2, 11d-11m-PGD2, MRE-269, BW245C, and 15R-15-methyl-PGD2 (15R-15m-PGD2) (Cayman Chemical (Ann Arbor, MI, USA); M-MLV reverse transcriptase (Ribonuclease H minus, point mutant) and polymerase chain reaction (PCR) Master Mix (Promega Corp., Madison, WI, USA).
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8

Lipid Signaling Pathway Reagents

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Carbachol, bradykinin, and fatty-acid-free bovine serum albumin (BSA) were purchased from Sigma-Aldrich (Sigma-Aldrich Chemie GmbH, Taufkirchen, Germany). S1P was from Biomol GmbH (Hamburg, Germany). All other materials were from previously described sources [24 (link),26 (link)].
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9

Lipid-Peptide Binding Assay Using PIP Strips

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The lipid-peptide overlay assay was performed using FITC-conjugated TB_KKG6K and PIP strips according to the manufacturer's instructions (Echelon Biosciences, Salt Lake City, UT, USA). To ensure the suitability of the applied detection method, 0.5 μg of FITC-TB_KKG6K was directly dotted in a volume of 1 μL onto the PIP strip membranes. The dotted peptide was allowed to dry for 30 min at 30°C before the PIP strips were tested with FITC-TB_KKG6K. Briefly, the PIP strips were blocked in blocking buffer (10 mM Tris [pH 8.0], 150 mM NaCl, 0.1% [wt/vol] Tween 20, 3% [wt/vol] fatty acid-free bovine serum albumin; Sigma-Aldrich, St. Louis, MO, USA) for 1 h. All of the subsequent experimental procedures were performed in the dark. The PIP strips were incubated for 1 h with FITC-TB_KKG6K and diluted in blocking buffer to a final concentration of 1.5 μg/mL. Then, the membranes were washed three times for 10 min each in blocking buffer. The FITC-TB_KKG6K binding to specific PIs was detected fluorometrically with a Typhoon FLA 9500 biomolecular imager (GE Healthcare, Chicago, IL, USA) equipped with a 473-nm laser and filters for excitation/emission wavelengths of 494/520 nm. The FITC fluorescence signal intensity was semiquantified by ImageJ/FIJI software (version 1.8.0/1.53q; U.S. National Institutes of Health, Bethesda, MD, USA).
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10

Glutathione Redox Assay Protocol

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The following reagents were purchased from Sigma-Aldrich; reduced glutathione (GSH), oxidized glutathione (GSSG), potassium phosphate, fatty acid free bovine serum albumin (BSA), Tris-HCl, Hank’s balanced salt solution (HBSS), dithiothreitol (DTT), 0.5 M ethylenediaminetetraacetic acid (EDTA), iodoacetamide, and catalase from bovine liver. Amicon Ultra Centrifugal Filters and D-tube Dialyzer with 12–14 kDa MWCO were purchased from Millipore (Burlington MA, USA). The Detergent Compatible (DC) Protein Assay was purchased from Biorad (Hercules CA, USA) and site-directed mutagenesis kits were from Agilent (Santa Clara, CA). Di-eosine-di-glutathione (DiE-GSSG) was purchased from Cayman Chemical (Item no. 11547, Ann Arbor, MI, USA).
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