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5 protocols using anti axl antibody

1

Immunohistochemical Analysis of AXL in PTC

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Paraffin-embedded tissue blocks from PTC patients who underwent thyroid lobectomy and specimens were retrieved from the pathology collection and sectioned to a thickness of 5 µm. The PTC tissue was designated the experimental group (40 individuals), while the adjacent normal thyroid (40 individuals) was designated the control group. All tissues were subjected to immunohistochemistry (IHC). The tissues were stained with an anti-AXL antibody (R&D Systems, USA) and routine HE. AXL expression was semi quantitated using the semiquantitative immunoreactive scoring system (IRS) as described previously [20 (link)], and the expression was defined as negative (IRS ≤ 1), mild positive (2 ≤ IRS ≤ 3), or strong positive (IRS ≥ 4) according to the percentage and intensity scores. All tissues were independently assessed by two pathologists who were blinded to the clinical data.
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2

Protein Expression Analysis of Tumor Cells

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Proteins were extracted by lysed tumor cells using 2× Laemmli Lysis Buffer (#1610737, Bio-Rad). The western blot analysis was used to determine expression levels of proteins of interest. The protein bands were detected by ECL Plus (#WBKLS0500, Millipore-Sigma) using the ChemiDoc Imaging System (Bio-Rad). Anti- PRMT1 antibody (#2449) and anti-RIPK1 antibody (#3493) were purchased from the Cell Signaling Technology and anti-AXL antibody (#AF854) was purchased from the R&D Systems.
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3

RTK inhibition and AXL signaling in U2OS cells

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Receptor tyrosine kinases (RTKs) were inhibited in U2OS cells overnight with 1 μM of each of the following inhibitors: Gefitinib (#HY-50895), Lapatinib (#HY-50898), Bemcentinib (#HY-15150), BMS-536924 (#HY-10262) purchased from MedChemExpress; Erdafitinib (#HY-18708) Lenvatinib (#HY-10981), Cabozantinib (#HY-13016), Galunisertib (#HY-13226), Linsitinib (#HY-10191) from Cedarlane Laboratories; and Crizotinib (#PF-02341066) from Selleckchem.com. PI3K was inhibited by treating cells with LY294002 (Millipore Sigma; #440202) at 10 μM for at least 1 h. Gas6-mediated stimulation of AXL in U2OS cells was performed by serum-starving cells for 24 hours prior to the addition of 200 ng/mL recombinant Human Gas6 (R&D Systems; #885-GSB) to the culture medium for 30 min. For AXL receptor blockade, U2OS cells were incubated with 20 μg/mL anti-AXL antibody (R&D Systems; #AF154) or 50 μg/mL anti-GAS6 antibody (R&D Systems; #AB885). Normal goat polyclonal IgG (R&D Systems; #AB-108-C) was used as control (50 μg/mL). Rho-associated kinases (ROCK) were inhibited with Y-27632 (Cell Signaling Technology; #13624) at 1 or 5 μM.
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4

Zika Virus Infection Modulation

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Cells cultured in 96-, 24-, or 6-well plates were infected with ZIKV at different MOIs for 1 h at 37°C. The HTO were infected at 105 PFU as described previously (38 (link)). For Axl receptor blockade, SC were preincubated with 10 μg/ml anti-Axl antibody (catalog no. AF154; R&D Systems) or 50 μg/ml anti-Gas6 antibody (catalog no. AB885; R&D Systems), or goat polyclonal IgG control (catalog no. AB-108-C; R&D Systems) for 2 h at 37°C prior to infection. Following infection, wells were replenished with fresh media without antibody. For Gas6 depletion, SC were serum deprived for 3 h prior to infection, infected without serum or in the presence of 5 nM recombinant human Gas6 (rhGas6) (catalog no. 885-GSB; R&D Systems), and then replenished with media containing 5% fetal bovine serum (FBS) following 1-h infection. For Axl kinase inhibition experiments, SC or HTO were preincubated with 1 μM R428 (catalog no. BGB324; Selleckchem) for 2 h prior to infection and after infection replenished with fresh media containing 1 μM R428 or DMSO vehicle control (1:10,000 dilution). ZIKV titers in the culture supernatant and intracellular ZIKV RNA was quantified by plaque assay and quantitative reverse transcription-PCR (qRT-PCR), respectively, as reported previously (48 (link), 49 (link)).
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5

Anti-Axl Antibody Inhibition Study

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Anti-Axl antibody was purchased from R&D Systems (Minneapolis, MN). All other antibodies were purchased from Cell Signaling Technology (Boston, MA). R428 was purchased from Selleck Chemicals (Houston, TX) and prepared in 0.5% hydroxypropylmethylcellulose (Sigma-Aldrich, St. Louis, MO) with 0.1% Tween-80 (Fisher Scientific, Pittsburg, PA). WT C57BL/6J (B6) mice were originally purchased from The Jackson Laboratory (Bar Harbor, ME). Axl-KO mice were on B6 background and housed under pathogen-free conditions at the animal facilities of the University of Cincinnati. All animal experiments were performed in accordance with the guidelines of the Institutional Animal Care and Use Committee.
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