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3 protocols using phospho yb1

1

Comprehensive Cell Lysis and Immunoblotting

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Cells were lyzed using 0.20% NP40, 50 mM Tris pH 7.5, 5% Glycerol, 1.5 mM MgCl2, 100 mM NaCl lysis buffer containing Phosphatase Inhibitor Cocktail 2 (Sigma, P5726) and cOmplete Protease Inhibitor Cocktail (Roche, 11873580001). Lysates were resolved by SDS-PAGE and incubated with primary antibodies. Antibodies used were against actin (A5441), CAMKK2 (HPA017389) (both Sigma), ERK1/2 (Sigma, M5670) and phospho-AKT (Ser473)(#9271), AKT (#9272), ALK(#3633), phospho-p90RSK (Ser380)(#12032), RSK1/2/3 (#9355), RSK1(#9333), RSK2 (#5528), phospho-RPS6 (Ser235/236)(#4858), RPS6 (#2217), phospho-ERK1/2 (Thr202/Tyr204)(#4267), phospho-FAK1 (Tyr397)(#8556), FAK1 (#13009), phospho-IGF1R (Tyr1131)(#3021), IGF1R (#9750), cleaved Caspase 3 (#9661), PARP-1 (#9542), AMPK1 (#2795), pAMPKα (Thr172)(#2535), FER (#4268), phospho-YB1 (Ser102)(#2900), and YB1 (#4202) were from Cell Signaling. Secondary antibodies were HRP-conjugated α-rabbit or α-mouse (GE Healthcare).
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2

Protein Expression Analysis in Cultured Cells

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RIPA lysis buffer was used to lyse the cultured cells (Santa Cruz Biotechnology, Santa Cruz, CA, USA) and a BCA Protein Assay Kit (Pierce Biotechnology, Rockford, IL, USA) was applied to determine protein concentrations. Antibodies to YB-1 (1:1000, Cell Signaling Technology, Danvers, MA, USA), GAPDH (1:1000, Cell Signaling Technology, Danvers, MA, USA), Cleaved PARP (1:1000, Cell Signaling Technology, Danvers, MA, USA), cyclinD1 (1:1000, Epitomics, Burlingame, CA, USA), ERK (1:1000, Cell Signaling Technology, Danvers, MA, USA), phospho-ERK (1:1000, Cell Signaling Technology, Danvers, MA, USA), phospho-YB-1 (1:1000, Cell Signaling Technology, Danvers, MA, USA), AKT (1:1000, Cell Signaling Technology, Danvers, MA, USA), phospho-AKT (1:1000, Cell Signaling Technology, Danvers, MA, USA), mTOR (1:1000, Cell Signaling Technology, Danvers, MA, USA) and phospho-mTOR (1:1000, Cell Signaling Technology, Danvers, MA, USA) were used. The anti-mouse/rabbit IgG secondary antibodies (1:2000, Cell Signaling Technology, Danvers, MA, USA) were used for 1 h. The bound proteins were visualized using electrochemiluminescence (GE Healthcare, Tokyo, Japan) and were quantitated using a ImageQuant LAS 4000 Mini (GE Healthcare, Tokyo, Japan).
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3

Protein Analysis of Cell Lysates

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The cells were harvested and whole‐cell lysates were prepared using lysis buffer (50 mM HEPES [pH 7.5], 150 mM NaCl, 5 mM EDTA, 1% NP‐40, and 0.65% CHAPS containing 1 mM PMSF and a protease inhibitor cocktail). Sample preparation and Western blot analysis were carried out as previously described18 using antibodies against the following proteins: Hsp70, AR (N‐20), β‐actin, c‐Jun, and Twist (Santa Cruz Biotechnology, Dallas, TX, USA); Hsp90, PSA, YB‐1, phospho‐YB‐1, and phospho‐Foxo3a (Cell Signaling Technology, Danvers, MA, USA); AR‐V7 (Precision Antibody, Columbia, MD, USA); UBE2C (BostonBiochem, Cambridge, MA, USA); FKBP5, CREB, and Sp1 (Gene Tex, CA, USA); laminB1 (Abcam, Cambridge, UK); Foxo3a (Upstate, Temecula, CA, USA); α‐tubulin (Calbiochem, San Diego, CA, USA); and HRP‐conjugated secondary antibodies (GE Healthcare, Little Chalfont, UK).
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