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9 protocols using ab19348

1

Immunohistochemical Analysis of ccRCC and mccRCC

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The paraffin sections of ccRCC and mccRCC tissues were used to perform immunohistochemical staining to measure the protein levels of CLDN10 (1:200; Affinity, AF0133). The paraffin sections of mice kidney tumors and lung metastases were used to perform immunohistochemical staining to measure the protein levels of Cleaved-Caspase 3 (1:200; Affinity, AF7022), E-cadherin (1:500; Abcam, ab40772) and N-cadherin (1:1000; Abcam, ab19348), respectively.
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2

Western Blot Analysis of EMT Markers

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Total proteins were extracted using RIPA lysis reagent (Beyotime, Shanghai, China) and the protein contents were measured via BCA kit (Beyotime, Shanghai, China) as per the instructions. Protein samples were separated through SDS-PAGE and transferred to polyvinylidene difluoride (PVDF) membrane (Millipore, MA, USA). After blocking, membranes were labeled with primary antibodies (anti-PTEN, 1:1000, ab245322; N-cadherin, 1:1500, ab19348; E-cadherin, 1:2000, ab133597; GAPDH, 1:2500, ab245355; Vimentin, 1:1000, ab92547; all purchased from Abcam, Cambridge, USA) overnight at 4 °C. Following TBST washing, the membranes were subjected to 2-h incubation with HRP-labeled secondary antibody (1:3000, ab205718) at ambient temperature. Protein band visualization was achieved with an ECL detection kit (Yeasen, Shanghai, China).
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3

Comprehensive Protein Analysis in Cells

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Total proteins were extracted from tissues and cells. Anti-GAPDH antibody (1:5000, A5441, Sigma), anti-CRIF1 (1:2000, 16260-1-AP, Proteintech), anti-cyclin D1 (1:2000, ab137875, Abcam), anti-cyclin E1 (1:1000, ab52189, Abcam), anti-CDK4 (1:1000, ab137675, Abcam), anti-CDK6 (1:1000, ab151247, Abcam), anti-MMP3 (1:1000, ab52915, Abcam), anti-TGF-β1 (1:500, ab9758, Abcam), anti-TGF-β2 (1:100, ab167655, Abcam), TGF-β receptor 1 (1:1000, ab155258, Abcam), anti-Smad2 (1:1000, 3122, CST), anti-Smad3 (1:1000, 9513, CST), anti-p-Smad2 (1:1000, 3108, CST), anti-p-Smad3 (1:1000, 9520, CST), anti-E-Cadherin (1:2000, ab133597, Abcam), and anti-N-Cadherin (1:1000, ab19348, Abcam) antibodies were used. Immunodetection was performed using an EZ-ECL chemiluminescence detection kit (BeitHaemek, Israel).
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4

Chondrocyte Protein Expression Analysis

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An Abcam type II collagen protein staining kit (America) and an Abcam N-cadherin (NCAD) protein staining kit (America) were employed to evaluate type II collagen and NCAD protein expressed in chondrocytes. Firstly, chondrocytes were cultured with the ionic extracts of BGC and Cu-BGC for 3 days, and then fixed with 2.5% gluteraldehde (Sinopharm Group Co., Ltd). And then the chondrocytes were incubated for 1 h by using 1% bovine testicular hyaluronidase. Afterwards, the primary antibody (COL II, Abcam: ab3092; NCAD, Abcam: ab19348, respectively) was used to incubate the chondrocytes for 12 h at 4°C, and second antibody (COL II: Abcam: ab150105; NCAD, Abcam: ab150107, respectively) was applied to incubate the cells at 37°C for 1 h. Finally, the cell cytoskeleton was stained by a fluorescein isothiocyanatephalloidin (FITC, Sigma-Aldrich, America) solution, and the nuclei were stained by a 4', 6-diamidino-2-phenylindole (DAPI, Sigma-Aldrich, America) solution. Fluorescent photographs were captured by a confocal laser scanning microscopy (CLSM, Leica TCS SP8). The contents of proteins were analyzed using Image pro-plus 6.0 (Media Cybernetics, US) software.
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5

Cadherin Expression in Lung Metastases

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Immunohistochemical staining was utilized to measure the protein expression levels of E-cadherin and N-cadherin in the paraffin sections of mice lung metastases, and the detailed primary antibody information is as follows: anti-E-cadherin (1:500; Abcam, ab40772) and anti-N-cadherin (1:1000; Abcam, ab19348).
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6

Protein Expression Analysis by Western Blot

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Western blot analysis was performed as earlier described [17 (link)]. Briefly, cell lysates were prepared and proteins were separated by 10% SDS–polyacrylamide gel electrophoresis (SDS-PAGE), and then transferred onto polyvinylidene fluoride (PVDF) filters. The probing antibodies used were as against the following antigens: E-cadherin (ab1416, mouse monoclonal antibody, 1:1000, Abcam, Cambridge, UK), N-cadherin (ab19348, mouse monoclonal antibody, 1:1000, Abcam), Vimentin.
SNAIL (ab53519, goat polyclonal antibody, 1:1000, Abcam), SLUG (sc166476, mouse monoclonal antibody, 1:1000, Santa Cruz), Twist.
OPN (ab8448, rabbit polyclonal antibody, 1:1000, Abcam), RUNX2 (ab115899, mouse monoclonal antibody, 1:4000, Abcam), SRSF1 (32–4500, mouse monoclonal antibody, 1:250, Thermo Fisher Scientific, Waltham, MA), HDAC1 (CY5154, rabbit monoclonal antibody, 1:1000, Abways, Shanghai, China), HDAC2 (CY5062, rabbit monoclonal antibody, 1:1000, Abways), HDAC3 (CY5595, rabbit monoclonal antibody, 1:1000, Abways), DDDK (M185-3L, mouse monoclonal antibody, 1:1000, MBL, Beijing, China) and GAPDH (TA-08, mouse monoclonal antibody, 1:3000, ZSGB-BIO, Beijing, China).
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7

Extracellular Vesicle Protein Characterization

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Following total protein extraction from cells or tissues, protein concentration was determined using a BCA assay kit (Thermo Fisher Scientific). Then, 30 μg of total protein was subjected to PAGE, transferred onto a PVDF membrane (Amersham, Little Chalfont, UK) and sealed. Thereafter, the membrane was probed with primary rabbit antibodies overnight at 4°C and then with HRP-labeled secondary antibody goat anti-rabbit (1: 5000, ab6721, Abcam). The membrane was developed with an optical luminometer (GE Healthcare, Little Chalfont, Buckinghamshire, UK), and quantified using Image Pro Plus 6.0 software. Primary antibodies used were as follows: CD63 (1: 1000, ab134045, Abcam, Cambridge, UK), Alix (1 μg/mL, ab76608, Abcam), TSG101 (1: 1000, ab125011, Abcam), Calnexin (1: 1000, ab22595, Abcam), β-actin (1: 5000, ab8227, Abcam), INHBA (1: 1000, ab128958, Abcam), IL13RA2 (1: 1000, ab55275, Abcam), E-cadherin (1: 1000, ab212059, Abcam), N-cadherin (1: 1000, ab19348, Abcam), Vimentin (1: 1000, ab45939, Abcam).
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8

Expression Profile of Kidney Cancer Markers

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Immunohistochemistry is used to detect the protein expression of ZNF582, TJP2 and ERK2 in 60 pairs of ccRCC and adjacent normal renal (AN) tissues and the protein expression of E-cadherin and N-cadherin in the lung metastases of mice kidney tumors. The details of these antibodies are as follows: anti-ZNF582 (1:300, ab254814, Abcam), anti-TJP2 (1:200, 18900-1-AP, Proteintech), anti-ERK2 (1:100, ab32081, Abcam), anti-E-cadherin (1:500, ab40772, Abcam) and anti-N-cadherin (1:1000, ab19348, Abcam).
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9

Antibody Labeling with Fluorescent Dyes

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Primary and secondary antibodies, (AF648 from R&D Systems, H00000999-M01 from Novus Biologicals, ab19348, ab7120 and ab7056 from Abcam) were labelled with amine-reactive dyes (Alexa Fluor 568 NHS ester and Alexa Fluor 647 NHS ester from Life Technologies and NHS-Fluorescein from Thermo Fisher Scientific) or TbL4 (Lumi4®-Tb-NHS, Lumiphore), both in concentration excess to the antibody solutions, in 100 mM carbonate buffer at pH 9.0. The mixtures were incubated while rotating at 25 rpm (Intelli-Mixer, ELMI) for 5 h at room temperature. The samples were purified using 30 kDa filter centrifugal devices (Amicon Ultra 0.5 mL filters) and stored in 100 mM Tris-HCl buffer, pH 7.2.
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