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Accupower greenstar rt qpcr master mix

Manufactured by Bioneer
Sourced in United States

AccuPower GreenStar RT-qPCR Master Mix is a ready-to-use solution for real-time quantitative reverse transcription polymerase chain reaction (RT-qPCR) analysis. It contains all the necessary components for cDNA synthesis and real-time PCR amplification, including a thermostable reverse transcriptase, DNA polymerase, and a green fluorescent dye for detection.

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5 protocols using accupower greenstar rt qpcr master mix

1

RT-qPCR of Immune and Angiogenic Genes in BMDMs

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Total RNA was extracted from BMDMs using an
AccuPrep Universal RNA Extraction Kit (Bioneer) according to the manufacturer’s
protocol. RT-qPCR was performed in triplicate by using AccuPower GreenStar
RT-qPCR Master Mix (Bioneer). The relative expression of genes (Il1b, Nos2, Il6, Tnfa, Arg1, Vegfa, Tgfb1, and Il10) was measured using a QuantStudio
6 Flex Real-time PCR system (Applied Biosystems) and normalized to
the expression of Gapdh. The PCR primers are listed
in Table S5.
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2

Impact of TNSO on Adipogenic Gene Expression

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To examine the effect of TNSO on adipogenic gene expression, 3T3-L1 preadipocytes were allowed to differentiate for 5 days with 0.75 μL/mL TNSO. TNSO was added on days 0, 2, and 4, whereas the control group was treated only with DMSO. On day 5, post-differentiation induction, total RNA of 3T3-L1 cells was extracted using the RNeasy Mini Kit (QIAGEN, Hilden, Germany). Target RNA was amplified using the AccuPower® GreenStar™ RT-qPCR Master Mix (Bioneer, Daejeon, Korea). Quantitative RT-PCR was performed on LightCycler® 96 system (Roche, Basel, Switzerland) as follows: reverse transcription at 60 °C for 15 min, pre-denaturation at 95 °C for 5 min, denaturation at 95 °C for 10 s, annealing at 55 °C for 30 s, and extension at 72 °C for 30 s. The denaturation step to extension step was cycled 45 times. Relative mRNA expression levels were normalized to those of β-actin as the internal control. The sequences of the primers were as follows: 5′-GAGGTATCCTGACCCTGA AGTA-3′ (β-actin forward), 5′-CACACGCAGCT CATTGTAGA-3′ (β-actin reverse), 5′-TGGAAGACAGCTCCTCCTCG-3′ (FABP4 forward), 5′-AATCCCCATTTACG CTGATGATC-3′ (FABP4 reverse), 5′-ACCTGGTAGACCACTGCATTGAC-3′ (FAS forward), 5′-CCTGATGAAACGACACATTCTCA-3′ (FAS reverse), 5′-TGAGACAG GAGATGTTGGAATG-3′ (adiponectin forward), 5′-ACGCTGAGCGATACACATA AG-3′ (adiponectin reverse).
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3

Quantitative Analysis of MHV-A59 Viral Load

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Primers were designed to detect the MHV A59 nucleocapsid (N) gene, which is comprised of 157 base pairs (bp). The forward primer was 5′-GCGTTGCAAAGCCCA-3′, and the reverse primer was 5′-CGCCGACATAGGATTCAT-3′. The brain, spinal cord, liver, lungs, spleen, and ileum were isolated from infected mice. The brain was separated into the olfactory bulb, cerebrum, and cerebellum. Each organ (20 mg) was homogenized and centrifuged at 3,000 × g. Viral RNA was isolated using the Viral Gene-spin Viral DNA/RNA Extraction Kit (iNtRON Biotechnology, Republic of Korea). For cDNA synthesis, the mixture of extracted RNA was incubated at 60°C for 15 min and immediately cooled on ice. The standard curve was generated using 10-fold serial dilutions of the purified cDNA. The dilution ranged from 109 to 101 copies/uL and was tested in triplicate. The standard curve was plotted between the standard DNA concentration (log copy number) and threshold cycle (Ct). Ct values in susceptible organ tissues were measured by real-time PCR (RT-PCR), and viral copy numbers per mg of organ were calculated by extrapolating the average Ct values from the standard curve. RT-PCR was conducted with the CFX96 real-time system (Bio-Rad, USA) and AccuPower GreenStar RT-qPCR Master Mix (Bioneer, Korea) according to each manufacturer's recommendations.
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4

Quantifying Viral Contaminants in Shellfish

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The supernatant extracted from each shellfish was filtered through a 0.22 um filter (Millipore, USA). To minimize the effect of the possible PCR inhibitors in shellfish extracts, a growth medium was added to the supernatant in the same volume. The total viral genomes were extracted using a MagListo 5M Forensic Extraction Kit (Bioneer, Korea) according to the manufacturer’s instructions. Real-time qPCR was performed to quantify the level of F+ RNA MS2 coliphage and F+ DNA M13 coliphage in shellfish samples using a CFX96 RT-PCR System (Bio-Rad, USA). To proceed with the amplification of the F+ DNA M13 coliphage genomes, AccuPower GreenStar qPCR Master Mix (Bioneer) was used in the real-time PCR assay. The F+ RNA MS2 coliphage genomes were detected via real-time fluorogenic reverse- transcription PCR using AccuPower GreenStar RT-qPCR Master Mix (Bioneer). RT-PCR was performed in a total volume of 20 μl following the manufacturer’s instructions. Reaction conditions were as follows: 95°C for 10 min, 40 cycles of 95°C for 15 s, 62°C for 60 s, with a final extension at 72°C for 5 min. Amplification was determined to be detectable if the cycle threshold (Ct) value was less than 35 [31 (link), 32 (link)].
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5

Comparative Analysis of Cytokine Expression

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mRNA was isolated from the spleen of C1qa KO and wild-type mice to compare the expression levels of cytokines and chemokines, such as IFN-α, IFN-β, IFN-γ, IL-6, macrophage inflammatory protein-1α (MIP-1α), and monocyte chemoattractant protein-1 (MCP-1). mRNA isolation was accomplished using TRIzol reagent (Ambion, Inc., USA), and cDNA was synthesized using M-MLV reverse transcriptase (Invitrogen). RT-PCR was conducted with the CFX96TM real-time system (BIO-RAD) using AccuPower GreenStar RT-qPCR Master Mix (Bioneer) according to each manufacturer's recommendations. The RT-PCR primers used are shown in Table 1. The Ct value of each gene, which is inversely correlated with the expression level, was measured as the cycle number at which fluorescent emission increased above a certain threshold. The relative expression of each sample was normalized to the expression of β-actin, the housekeeping gene, and calculated by the 2−△△Ct method.
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