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6 protocols using dapi vectashield medium

1

Indirect Immunofluorescence Staining Protocol

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Indirect immunofluorescence was performed as previously described44 (link). Cells grown on glass coverslips for 1 and 2 wks and porous membranes at the A–L and L–L interface for 1, 2 and 4 wks in DMEM, A-DMEM and UroM media were fixed at room temperature with cold (− 20 °C) 100% ethanol for 25 min. After fixation, cells were washed with PBS and incubated in blocking solution containing 1% Bovine Serum Albumin (BSA, Sigma) in PBS for 45 min at room temperature. Primary and secondary antibodies were diluted in 1% BSA in PBS and incubated overnight at 4 °C and 1.5 h at room temperature, respectively. Extensive washing with PBS was performed between each step. Finally, cells were mounted in DAPI-Vectashield medium (Vector Laboratories, Burlingame, CA, USA). For negative controls, incubation with primary antibodies was omitted.
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2

Immunofluorescence Staining of Pancreatic Tissue

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Frozen tissue array, fixed in 100% Acetone, was obtained from US Biomax (Rockville, MD). Mouse and human pancreatic sections (5 μm) were prepared in house from frozen Neg-50 Frozen Section Medium (Thermo Fisher Scientific). Tissue sections were stained with anti-HPi2 (1:50) and secondary donkey anti-mouse conjugated antibody (Jackson ImmunoResearch). Insulin staining with guinea pig anti-insulin (Abcam) was used to locate pancreatic islets in pancreatic sections. Slides were mounted in DAPI-Vectashield medium (Vector Laboratories, Burlingame, CA) and observed under an ECLIPSE Ni-E microscope (Nikon Instruments, Melville, NY).
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3

Immunofluorescence Imaging of PAD Enzymes

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PC3 and PNT2 cells (5×105 cells/well) were seeded on a cover slip in a 24-well plate in triplicate, incubated for 24 h, washed gently with prewarmed PBS, fixed with 4% PFA for 10 min at RT, washed 3 times with cold PBS and resuspended in PB for 5 min at RT. The buffer was then removed and the cells were washed 3 times as before.
After incubation with PAD2 or PAD4 primary antibodies (1:500 dilution in 3% BSA/PBS) for 1 h at 4°C on a shaking platform, the cells were washed 3 times with cold PBS and further incubated with AlexaFluor 488 conjugated anti-rabbit IgG secondary antibody (Invitrogen; 5 µg/ml in 3% BSA/PBS) at 4°C for 1 h on a shaking platform in the dark. The cells were then washed 3 times with cold 1% BSA/PBS and the cover slips mounted on to slides with DAPI-VECTASHIELD medium (Vector Laboratories, Inc., Burlingame, CA, USA). Images were acquired using a fluorescence microscope (1X81 motorized inverted fluorescence microscope, Olympus Corporation, Hamburg, Germany). The mean green fluorescence intensity of the fluorescence images was analysed as per the manufacturer's instructions using the CellM imaging software (Olympus Corporation) provided with the Olympus 1X81 fluorescence microscope (Olympus Corporation).
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4

Quantifying Lipid Accumulation in HepG2 Cells

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To assess intracellular lipid accumulation, HepG2 cells seeded on coverslips were exposed to stimuli for 4 h, fixed by using 4% PFA for 10 min, and stained with Nile Red for 15 min. After washing three times with PBS, 5 min each, specimens were counterstained and mounted in DAPI Vectashield medium (Vectorlab, H1500, Newark, CA, USA). Images were captured using a Zeiss LSM710 spectral confocal microscope (Carl Zeiss, Gottingen, Germany). Excitation at 543 nm (HeNe laser) and 405 nm (argon ion laser), and emissions were detected and analyzed. Correlated Total Cell Fluorescence (CTCF) was calculated as follows:
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5

Quantitative Confocal Analysis of Occludin in Brain Tissue

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Confocal analyses were conducted as previously reported (41 (link)). The right brain hemispheres taken from FITC-albumin injected animals were fresh-frozen at −80°C. For analysis, they were embedded in Tissue-Tek OCT (Sakura Finetek, Torrance, CA) and were sectioned with a cryostat. Ten micrometers coronal sections cut from near the hippocampal formation as previously described were placed on positively charged slides which were washed with PBS before fixation in 4% paraformaldehyde for 15 min at room temperature. All slides were washed thrice with 100 μl of PBS and then incubated for an additional 1 h in 100 μl of a 5% normal goat serum and 0.5% Igepal CA-630 solution (Sigma-Aldrich). Samples were subjected to a primary stain with 100 μl of a 1:200 dilution rabbit anti-mouse occludin (clone OC-3F10; Invitrogen, Carlsbad, CA) overnight at 4°C. After three washes with PBS, the Alexa Fluor 647 Goat anti-rabbit IgG secondary was applied at a 1:500 dilution in a total volume of 100 μl for 1 h (Invitrogen). After five final washes with PBS, slides were dried and covered with Vectashield medium + DAPI (Vector Laboratory, Burlingame, CA). Images were taken at room temperature using a Leica DM2500 with a 63× oil immersion objective, and were subsequently analyzed with Leica Acquisition Suite software (Wetzlar, Germany).
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6

Liver Ischemia-Reperfusion Injury Assessment

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Liver paraffin sections (4μm) were stained with hematoxylin-eosin (H&E). The severity of liver IRI was graded blindly by modified Suzuki's criteria on a scale of 0–4 (12 (link)). Immunofluorescence staining was performed on frozen sections with primary mAb against mouse neutrophils Ly-6G (1A8, BD Biosciences, San Jose, CA), macrophages CD68 (FA-11; AbD Serotec, Raleigh, NC) and Alexa Fluor® 488 actin conjugate (Life Technologies). The secondary Ab for Ly-6G/CD68 was goat anti-rat Alexa Fluor® 555 (Invitrogen). Slides, mounted with VECTASHIELD medium/DAPI (Vector Labs, Burlingame, CA)/F-actin were evaluated blindly by counting labeled cells in 10 high-power fields (HPF). Results were expressed as average number of positive cells/HPF (x400)
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