The largest database of trusted experimental protocols

35 protocols using biozero

1

Localization of SLC18B1 Protein in Rat and Mouse Brains

Check if the same lab product or an alternative is used in the 5 most similar protocols
Indirect immunofluorescence microscopy was performed as described57 . Brain samples were obtained from male Wistar rats or C57BL/6 mice perfused intracardially with 4% (w/v) paraformaldehyde in 0.1 M phosphate buffer (pH 7.4). Cultured cells on poly-l-lysine-coated coverslips were fixed with 4% paraformaldehyde in PBS for 30 minutes. The primary antibody against mouse SLC18B1 protein was diluted 1:200 (v/v) with PBS containing 0.5% (w/v) BSA and the sample was incubated for 1 hour at room temperature. Washing steps and secondary antibody treatment were performed as described57 . The specimens were observed either under an Olympus FV300 confocal laser microscope (Olympus) or BIOZERO (Keyence).
For immunoperoxidase labeling, coronal sections of the mouse brain 30 μm thick were cut on a freezing microtome. Immunoperoxidase staining was performed on free-floating sections according to standard immunoperoxidase protocols as described58 (link). The sections were photographed with BIOZERO (Keyence) and merged to obtain whole brain images using image-joint software BZ-Analyzer (Keyence).
+ Open protocol
+ Expand
2

Fluorescence Microscopy of GFP2 Expression

Check if the same lab product or an alternative is used in the 5 most similar protocols
PE transgene- and BRET reporter GFP2 expression was verified with fluorescence microscopy (Keyence BioZero, Neu-Isenburg, Germany) with constant exposure times of 0.8 s.
+ Open protocol
+ Expand
3

Quantifying PDL Cell Expression

Check if the same lab product or an alternative is used in the 5 most similar protocols
The middle one-third buccal aspect of the PDL on the distal palatal root was photographed using an optical microscope (Biozero; Keyence). Quantitative images were measured using image analysis software (BZ analyzer; Keyence). The number of bFGF- and VEGF-positive PDL cells was counted in a rectangular area (300×400 µm) (Fig. 2B). Three representative sections from each of the five samples of all groups were measured in a blinded manner.
+ Open protocol
+ Expand
4

Quantifying Influenza A Virus NP Localization

Check if the same lab product or an alternative is used in the 5 most similar protocols
A549 cells infected with FPV (MOI 5) were fixed with 4% formaldehyde for 15 min at 4°C at the indicated time points. After washing, permeabilization was performed with 0.1% TritonX-100 for 15 min at RT. Nucleoprotein (NP) localization was detected using anti-influenza A virus NP primary antibodies (AbD Serotec, #MCA-400) and Alexa Fluor® 488 chicken anti-mouse IgG secondary antibodies (Thermo Fisher Scientific, #A21200). Nuclei were counterstained with DAPI (Thermo Fisher Scientific). For quantification, two random areas were analyzed using the fluorescence microscope BIOZERO (Keyence). Quantification of nuclear localization was performed using FIJI Software's Cell Counter plugin (Schindelin et al., 2012 (link)).
+ Open protocol
+ Expand
5

Histological Analysis of Cultured Femurs

Check if the same lab product or an alternative is used in the 5 most similar protocols
The cultured femurs were fixed in 10% neutral buffered formaldehyde and decalcified by immersion in 10% formic acid for 7 days. The tissue specimens were dehydrated using a graded ethanol series (50% → 70% → 100%) and embedded in paraffin. Additionally, 5 μm thick sections were obtained from paraffin-embedded specimens using a microtome. The sections were subjected to deparaffinization by immersion in a lemozole and ethanol series (100% → 90% → 70%) and then stained with Alcian blue and hematoxylin/eosin (HE). The stained sections were observed under a bright field using a fluorescence microscope (Biozero, Keyence, Osaka, Japan).
+ Open protocol
+ Expand
6

Tumor Angiogenesis and T Cell Infiltration

Check if the same lab product or an alternative is used in the 5 most similar protocols
Tumors were sliced into 7 μm-thick sections, fixed with 4% paraformaldehyde/PBS for 10 min at room temperature (RT), and blocked with TNB buffer [0.1 M Tris-HCl, pH 7.5, 0.15 M NaCl, 0.5% TSA blocking reagent (PerkinElmer)] for 1 hr at RT. To analyze tumor angiogenesis, sections were incubated with anti-PECAM1 (1:200 dilution; Biolegend) and -α-SMA (1:200 dilution; Abcam ab5649) antibodies at 4 °C overnight. To examine tumor-infiltrated T cells, sections were incubated with primary antibodies against CD4 (clone GK1.5) and CD8 (clone 53–6.7) (1:200 dilution; Biolegend) at 4 °C overnight, and subsequently with Alexa 488-conjugated secondary antibodies (1:1000 dilution; Invitrogen). Fluorescence signals were observed using the fluorescence microscope Biozero (KEYENCE).
+ Open protocol
+ Expand
7

Osteoporosis in Ovariectomized Rat Model

Check if the same lab product or an alternative is used in the 5 most similar protocols
A postmenopausal rat model of osteoporosis was established by performing ovariectomies (OVX) of female Sprague Dawley rats [10 (link),26 (link)]. Four weeks after OVX, ALN-loaded HA gel sheets were applied to the shaved abdomens of the OVX rats for a period of 24 h every 2 weeks at a dose of 6.0 mg/rat (three pieces, 3.14 cm2 piece of gel sheet containing 2.0 mg of ALN). Separate OVX rats were subcutaneously injected with 1 mg/kg ALN every 2 weeks. Eight weeks after OVX, the rats were euthanized, and their tibias were excised, fixed using 4% paraformaldehyde in PBS, embedded in paraffin, and sectioned by microtome. The tibial sections were stained with hematoxylin and eosin and observed by microscopy (BIOZERO®; Keyence, Osaka, Japan).
+ Open protocol
+ Expand
8

Quantifying Cell Orientation on Collagen

Check if the same lab product or an alternative is used in the 5 most similar protocols
The orientation of the cells on the substrates was examined relative to the collagen molecular orientation by taking photographs of the fluorescent phalloidin staining images of the cells using a fluorescence microscope (Biozero, Keyence, Osaka, Japan). Cell orientation was quantitatively analyzed using the Cell Profiler software (Broad Institute, Cambridge, MA) (Fig. S4). The degree of cell orientation was characterized by the orientation order parameter for the 2-dimensional system, f2D, using the following equations41 :


The degree of cell alignment f2D takes a value ranging from −1 (cells perfectly aligned perpendicular to the collagen orientation), 0 (cells oriented randomly), to 1 (cells perfectly aligned parallel to the collagen orientation).
+ Open protocol
+ Expand
9

Nrf2 Activation Evaluation in AML12 Cells

Check if the same lab product or an alternative is used in the 5 most similar protocols
Activation of Nrf2 in AML12 cells was evaluated by immunofluorescence microscopic observation. Cells cultured on a glass bottom dish were stimulated by GW4064 and then fixed with ice-chilled methanol for 5 min and permeabilized with 0.1% Triton X-100 in PBS for 10 min at room temperature. After blocking treatment, cells were labeled with anti-Nrf2 as a primary antibody for 1 h at room temperature, followed by incubation with a secondary antibody conjugated Alexa Fluor 488 (Thermo Fisher Scientific Inc., Waltham, MA, USA). Then nuclei were counterstained with Hoechst 33342. We investigated the expression and localization of Nrf2 in AML12 cells with a fluorescent microscope (Biozero; Keyence Corp., Osaka, Japan).
+ Open protocol
+ Expand
10

Evaluating Mucosal Integrity using Caco-2 Cells

Check if the same lab product or an alternative is used in the 5 most similar protocols
TER and ZO-1 protein immunofluorescence. The differentiated-Caco-2 cell monolayers grown on Transwell inserts (Corning ® Inc., USA) was used to evaluate the effect of LrSKG34 on mucosal integrity in vitro, as previously described [13] . The differentiation of Caco-2 cell lines was shown as transepithelial resistance (TER) (Millicell ERS2 voltohmmeter (Merck, Millipore, USA)). The TER measurement of differentiated Caco-2 monolayers was performed based on the manufacturer's instructions (Merck Millipore). All TER measurements were conducted in triplicate. Formation of tight junctions was also evaluated as one of indicators of the differentiation of Caco-2 cell monolayers. ZO-1 protein, one of tight junction proteins, was detected using immunofluorescence in this study. Immunofluorescence assays were conducted as described in a previous study [13, 15] . For disrupting the tight junction, hydrogen peroxide in DMEM cell culture media without FBS was used in this study. Fluorescence was evaluated using fluorescence microscope (Biozero, Keyence, Japan). More than 10 images (30 ×) were taken for each condition in more than three experiments.
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!