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21 protocols using md 2018 plus

1

HPLC-DAD Separation of Organic Compounds

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The HPLC–DAD system consisted of a quaternary pump (JASCO-2089 Plus pump), a thermoregulated autosampler set at 4 °C (Intelligent autosampler JASCO AS-2059) and a photodiode array detector (PDA) detector (UV/VIS detector JASCO MD-2018 Plus). The column temperature was 30 °C. Separation of compounds was achieved on a Luna C18 column (5 μm, 4.6 mm × 25 cm) (Phenomenex, USA). The flow rate was set to 0.5 mL/min and the mobile phase consisted of water with o-phosphoric acid (0.01%) as solvent A and acetonitrile with o-phosphoric acid (0.01%) as solvent B. The binary gradient elution was: 80–100% A (0–15 min., linear gradient), 100% A (15–25 min.) and 100–80% A (25–27.5 min., linear gradient).
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2

Comprehensive Analytical Characterization

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HPLC analyses have been performed on a Jasco system (PU-2089 Plus-Quaternary gradient pump equipped with a Jasco MD-2018 Plus photodiode array detector). Cell pellet were lyophilized by a Savan Micro Modulyo freeze dryer (Thermo Scientific, Austin, TX, USA). GC-MS analysis was carried out by an Ion-Trap Polaris Q MS instrument (Thermo) coupled to a Focus gas chromatograph (Thermo). 1H and 13C NMR spectra were recorded on Bruker DRX 600 spectrometer equipped with an inverse TCI CryoProbe. All chemicals and analytical grade solvents were purchased from Sigma Aldrich. Molecular and bioinformatics analyses were performed by Genomix 4Life s.r.l. (Baronissi, Salerno, Italy).
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3

Amino Acid Profiling by HPLC-Fluorescence

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The same filtrate that was used for the analysis of organic acids was analyzed using a JASCO LC-2000 Plus Series HPLC system (JASCO, Tokyo, Japan). Chromatographic separation was conducted with an AccQ-Tag Amino Acids C18 Column (3.9 mm × 150 mm, 4 μm; Waters Corporation, Milford, MA, USA). Gradient elution was carried out with AccQ-Tag/water (solvent A; 10:90, v/v) and acetonitrile/water (solvent B; 60:40, v/v). The following binary mobile phase linear gradients were used: 100% A at 0 min, 98% A at 5 min, 93% A at 15 min, 90% A at 19 min, 67% A at 32–33 min, 0% A at 34–37 min, and 100% A at 38 min. Injection volumes were 10 μL, and the column temperature and flow rate were 37 °C and 1 mL/min, respectively. The detection was performed using a fluorescent detector. AccQ-Fluor Reagent Kit (WAT052880, Waters Corporation, Milford, MA, USA) was simultaneously used as derivatizing agents, according to the manufacturer’s instructions. The photodiode array (PDA) detector (MD-2018 Plus, JASCO, Tokyo, Japan) wavelength was set to 254 nm for the determination of the AccQ-Fluor Reagent-derivatized amino acids. The concentrations of individual free amino acids were determined using five-point calibration curves of the amino acid standard (WAT088122, Waters Corporation, Milford, MA, USA). The free amino acid contents of two samples prepared in the same conditions were analyzed twice.
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4

Sterol Sulfate Profiling and Synthesis

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Methanol and water, LC/MS grade, were from MercK (Darmstadt, Germany). [25,26,26,26,27,27,27-D7]-cholesterol sulfate standard (CHOS-d) and cholesterol sulfate were purchased from Sigma-Aldrich (Milan, Italy). Reference sterol sulfates were synthesized in-house by chemical derivatization of sterols (24-methylene cholesterol, desmosterol, campesterol, brassicasterol, dihydrobrassicasterol, stigmasterol, fucosterol, and β-sitosterol) that were purchased from Sigma-Aldrich (Milan, Italy). HPLC for synthetic StS standard purification were performed on a JASCO system (PU-2089 Plus quaternary gradient pump equipped with a MD-2018 Plus photodiode array detector and Sedex 85 high-sensitivity LT-ELS detector). UPLC–MS analysis was performed on Q-Exactive hybrid quadrupole-orbitrap mass spectrometer (Thermo Scientific, Waltham, MA, USA) equipped with an Infinity 1290 UHPLC System (Agilent Technologies, Santa Clara, CA, USA).
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5

Determination of Caffeine Content in Extracts

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The caffeine content of the extracts was analyzed using an HPLC-DAD system (Jasco, Tokyo, Japan). This system consisted of an LC-NetII/ADC hardware interface, an automatic sampler (Jasco AS-2057 Plus), a pump (Jasco PU-2089 Plus), a multi-wavelength diode array detector (DAD, Jasco MD-2018 Plus), and a column oven (Jasco CO-2060 Plus). The gradient elution used was the following: 0 min, 5% B; 40 min, 25% B; 55 min, 45% B; 60 min, 60% B; 65 min, 5% B (solvent A: 0.5% acetic acid; solvent B: 100% methanol), with a flow rate of 1.1 mL/min. The chromatographic column was a Zorbax-SB-C18 (5 μm, 250 mm × 4.6; Agilent Technologies, Santa Clara, CA, USA), at 28 °C. The DAD recorded data from 200 to 600 nm were monitored at 274 nm. For HPLC analyses, the lyophilized extracts were dissolved in H2O (10 mg/mL) and the injected volume was 20 µL. Caffeine was used as the standard for HPLC analyses validation. The calibration curve (y = 36,096x − 227,800; R2 = 0.9996) was constructed in the linear range of 1.5–800 µg/mL. The detection limit of the method was 1.24 µg/mL.
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6

Catalytic Reduction of p-Nitrophenol

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All catalysis experiments were carried out under a protective argon atmosphere with overpressure. Before the experiments, an aqueous stock solution of p-nitrophenol (0.001 M) was flushed with argon for 30 min at 25 °C in an ultrasound bath to expel any dissolved oxygen. A volume of this p-nitrophenol solution (5 mL, 0.005 mmol) was added to a vial containing the catalytic particles (~5 mg) and NaBH4 (1.5 mmol, final concentration of 0.3 M). The reaction mixture was then stirred at 700 rpm at 25 °C in a thermoshaker (MHL23, Hettich Benelux). To follow the reaction progress, aliquots of 100 µL were taken after 0, 10, 30, 60, 120 and 180 min. The aliquots were diluted with 1 mL of distilled water and placed immediately in a freezer at −18 °C to quench any ongoing reactions. Sampled aliquots were analyzed via high-performance liquid chromatography (HPLC) with photodiode-array UV-vis detection (Jasco MD-2018 Plus, Tokyo, Japan). A reverse-phase phenyl-hexyl column (100 × 4.6 mm, 2.6 µm particle size) was used, with a 30/70 mixture of acetonitrile/HClaq (0.05 mmol/L) as an eluent. Chromatograms showed two main peaks. The compounds were identified via comparison with such pure standards as 4-nitrophenol (adsorption maximum at 317 nm, retention time Rt = 3 min) and 4-aminophenol (absorption maximum at 273 nm, retention time Rt = 1 min).
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7

NMR and Mass Spectrometry Analysis

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Optical rotations were measured on a Jasco P2000 digital polarimeter (Jasco, Cremella, Italy). UV spectra were acquired on a Jasco V-650 spectrophotometer, NMR spectra were recorded on a Bruker Avance DRX 600 (Bruker, Milan, Italy) equipped with a cryoprobe operating at 600 MHz for protons. Chemical shift values are reported in ppm (δ) and referenced to internal signals of residual protons (CD3OD 1H δ3.34, 13C 49.0 ppm). High-resolution mass spectra were acquired on a Q-Exactive Hybrid Quadrupole-Orbitrap mass spectrometer (Thermo Scientific, Milan, Italy); HPLC analyses have been performed on a Jasco system (PU-2089 Plus-quaternary gradient pump equipped with a Jasco MD-2018 Plus photodiode array detector). [1-13C]-acetate, [2-13C]-acetate and [1,2-13C2]-acetate, [1-13C]-glycolate (all sodium salts), and salicylhydroxamic acid (SHAM) were obtained from Sigma Aldrich (Milan, Italy). Solvents were purchased from VWR (Milan, Italy) and were HPLC-grade.
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8

HPLC-DAD-FLD Analysis of Plant Extracts

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HT analysis was carried out with 1 mL of each extract (Section 3.6) in an HPLC-DAD-FLD system (Jasco, Tokyo, Japan), consisting of a LC-NetII/ADC hardware interface, a pump (Jasco PU-2089), an automatic sampler (Jasco AS-2057 Plus), a multiwavelength diode array detector (Jasco MD-2018 Plus) coupled to a fluorescence detector (Jasco FP-2020 Plus) and a column thermostat (Jasco CO-2060 Plus). HT was evaluated by fluorescence and monitored at λ excitation and λ emission of 280 and 330 nm, respectively. A gradient elution program using as solvents acetic acid (A, 1%) and methanol (B, 100%) was employed: 0 min, 5% B; 30 min, 25% B; 50 min, 75% B; 55 min, 100% B; 60 min, 100% B; 63 min, 5% B. A Zorbax-SB-C18 (250 × 4.6 mm, 5 μm, Agilent Technologies, Amstelveen, The Netherlands) chromatographic column was used, at 20 °C, with a flow rate of 1 mL/min and an injection volume of 20 µL. A HT calibration curve was obtained (y = 10147x + 3486.5, R2 = 0.9998, 0.25–200 μg/mL). Results are presented in g/100 g of sample in fw and dw.
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9

Polyphenols Analysis by Integrated HPLC

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Polyphenols analysis was performed by LC-4000 Series Integrated HPLC Systems (JASCO, Tokyo, Japan) consisting of a column oven (model CO-2060 plus), set at 30 °C, a UV/Vis photodiode array detector (model MD-2018 plus), an intelligent fluorescence detector (model PF-2020 plus), a liquid chromatography pump (model PU-2089 plus), an autosampler (AS-2059plus) and a ChromNAV software program (JASCO, Japan). A C18 Luna column 5 μm particle size, 25 cm × 3.00 mm I.D. (Phenomenex, Torrance, CA, USA) was used, with a guard cartridge of the same material. All solvents were filtered through a 0.45 μm filter disk (Millipore Co., Bedford, MA, USA For chestnut shell HPLC mobile phase were: water:formic acid (99.80:0.20, v/v) (A) and methanol (B). Running conditions were: 0 min 95% A and 5% B; 0–45 min 55% B. The system was equilibrated between runs for 10 min using the starting mobile phase composition. The temperature was maintained at 30 °C. Each sample was analyzed three times. The flow-rate was 0.8 mL/min. The injection volume was 20 μL.
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10

Preparative HPLC Purification of Dominant Compound

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Sub-fraction 2 (850 mg), obtained from the column chromatographic separation, was further separated and purified by preparative HPLC to yield a 76 mg of pure compound representing the dominant constituent of the most active sub-fraction. Isolation of the compound was done using the preparative HPLC system (Jasco, Germany, pump PU-2087 plus, diode array detector MD 2018 plus, a column thermostat CO 2060 plus, autosampler AS 2055 plus, LC Net II ADC Chromatography Data Solutions). Separations were performed on a reverse phase column Reprosil 100 C-18 (250 × 20 mm, 5 µm) using the binary gradient of the mobile phase (water and methanol) at a flow rate of 10 mL min -1 and column temperature of 40 ˚C with the sample injection loop of 1000 µL. The mobile phase optimized for the preparative HPLC consisted of water and methanol in gradient conditions as follows: 60-30 % of water (10 min), 30-20 % water (5 min), 20-10 % water (5 min), 10-0 % water (10 min) and 0 % water (10 min) and additional 5 minutes to return the system to the initial mobile phase. The retention time (t R ) of the isolated compound under these conditions was 19.273 min as shown in Fig. 2.
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