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7 protocols using anti atg14

1

Antibodies for Western Blot Analysis

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All primary antibodies used for western blots were purchased from commercial sources. Antibodies from Santa Cruz include: anti-beclin 1 (sc11427), anti-myc HRP (sc40 HRP) and anti-β-actin HRP (sc47778 HRP). Antibodies from Cell Signaling Technology include: anti-UVRAG (#11315), anti-Vps34 (#4263), anti-Atg14 (#96752, to detect mouse Atg14), anti-p-AMPKα(Thr172) (#2535), anti-AMPKα (#2532), anti-p-Raptor(Ser792) (#2083), anti-Raptor (#2280), anti-TBC1D1 (#66433) and anti-HA (#3724, to detect Tlr9-HA in tissue lysates of Tlr9-HA KI mice). Other primary antibodies include: anti-p-ACC(Ser79) (#07–303, Millipore), anti-ACC (#04–322, Millipore), anti-p-TBC1D1(Ser237) (#07–2268, Millipore), anti-Atg14 (M184–3, MBL International, to detect human ATG14), anti-HA high affinity-HRP (#12013819001, Roche, to detect overexpressed TLR9-HA in cells and Tlr9-HA after immunoprecipitation from muscle lysates of the Tlr9-HA KI mice), anti-Flag M2-HRP (A8592, Sigma), and anti-GLUT4 (GT41-A, Alpha Diagnonstic International). To detect beclin 1 in Tlr9-HA immunoprecipitates from muscle lysates by western blot analysis, 10% MINI-PROTEAN TGX Precast gels (Bio-Rad) were used. For detection of all other proteins, 4–20% Precast gels were used.
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2

Antibody Targeting of Lon Protease Autophagy Pathway

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Antibodies to human Lon were produced as described previously [35 (link)]. The following primary antibodies were used in this study: Autophagy Induction Antibody Sampler Kit containing Anti-ULK1 monoclonal antibody, anti-p-ULK1 S555, anti-ATG13, anti-p-ATG13 S355, anti-FIP200, anti-ATG101. Anti-NFkB anti-LC3B, anti-LAMP1, anti-VDAC, anti-Calnexin, anti-Tubulin, and ULK1 antibody sampler Kit containing anti-ATG14, anti-p-ATG14 S29, anti-Beclin1, anti-p-Beclin1 S15, were purchased from Cell signaling technology. Anti-FACL4, anti-GAPDH, and anti-β-actin were purchased from Gentex also the Gentex helped in producing in-house antibody anti-FUNDC1 and anti-p-FUNDC1 S17 which were raised in rabbit and purified. Anti-HSP60 and anti-Aconitase2 from santa cruz. Anti-myc and and anti-Flag were obtained from Merck Millipore. Anti-HIF1α was obtained from Life science bio. Anti-ULK1 for immuofluorescence studies was obtained from Santa cruz. Cobalt chloride (CoCl2), SBI-0206965, Bafilomycin A1 and N-Acetyl Cysteine (NAC) were purchased from sigma, dissolved in DMSO and stored at −20 °C.
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3

Antibodies for Western Blot Analysis

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All primary antibodies used for western blots were purchased from commercial sources. Antibodies from Santa Cruz include: anti-beclin 1 (sc11427), anti-myc HRP (sc40 HRP) and anti-β-actin HRP (sc47778 HRP). Antibodies from Cell Signaling Technology include: anti-UVRAG (#11315), anti-Vps34 (#4263), anti-Atg14 (#96752, to detect mouse Atg14), anti-p-AMPKα(Thr172) (#2535), anti-AMPKα (#2532), anti-p-Raptor(Ser792) (#2083), anti-Raptor (#2280), anti-TBC1D1 (#66433) and anti-HA (#3724, to detect Tlr9-HA in tissue lysates of Tlr9-HA KI mice). Other primary antibodies include: anti-p-ACC(Ser79) (#07–303, Millipore), anti-ACC (#04–322, Millipore), anti-p-TBC1D1(Ser237) (#07–2268, Millipore), anti-Atg14 (M184–3, MBL International, to detect human ATG14), anti-HA high affinity-HRP (#12013819001, Roche, to detect overexpressed TLR9-HA in cells and Tlr9-HA after immunoprecipitation from muscle lysates of the Tlr9-HA KI mice), anti-Flag M2-HRP (A8592, Sigma), and anti-GLUT4 (GT41-A, Alpha Diagnonstic International). To detect beclin 1 in Tlr9-HA immunoprecipitates from muscle lysates by western blot analysis, 10% MINI-PROTEAN TGX Precast gels (Bio-Rad) were used. For detection of all other proteins, 4–20% Precast gels were used.
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4

Rapamycin Modulates Autophagy Markers

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The reagent rapamycin (Rapa; R0395; Sigma-Aldrich) was used in the study. The primary antibodies used were anti-ATG14 (no. 96752; Cell Signaling Technology), anti-UVRAG (no. 13115; Cell Signaling Technology), anti-BECN1 (no. 54101; Cell Signaling Technology), anti-p62 (P0067; Sigma-Aldrich), anti-LC3 (L8918; Sigma-Aldrich), anti-Bif1 (NBP2-24733; Novus), anti-GAPDH (RM2002; Beijing Ray Antibody Biotech), anti-RABV (5B12) (NB110-7542; Novus), and fluorescein isothiocyanate (FITC)-conjugated anti-RABV (800-092; FUJIREBIO). The secondary antibodies used were horseradish peroxidase (HRP)-conjugated goat antirabbit IgG (ab97051; Abcam) and goat antimouse IgG (sc-2005; Santa Cruz).
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5

Western Blotting for Autophagy Proteins

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Western blotting was carried out as previously described,42 (link) using anti-LC3 (Abcam, Cambridge, UK), anti-ATG2A (Cell Signaling Technology Inc., Danvers, MA, USA), anti-ATG14 (Cell Signaling Technology Inc.), and anti-YTHDF1 (Proteintech, Wuhan, China). Secondary antibodies were obtained from Sigma-Aldrich.
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6

Autophagy Regulatory Protein Antibody Protocol

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Antibodies used in this study included anti-ATG14 (#5504, Cell Signaling), anti-Flag M2 (F3165, Sigma), anti -HA (12CA5, Roche), anti-EGFP (GL-8, Clontech), anti-LC3 (7543, Sigma), anti-p62 (PM045, MBL), anti-ATG16 (PM040, M150-3, MBL), anti-STX17 (HPA001204, Sigma), anti-beclin 1 (sc-11427, Santa Cruz), anti-Tom20 (Ab78547, Abcam), anti-LAMP2 (sc-18822, Santa Cruz), anti-Myc (9E10, DSHB) and anti-β-tubulin (E7, DSHB). U2OS and HEK293T were described before25 (link).
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7

Autophagy Pathway Protein Analysis

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Anti-Atg14 (5504S, Cell Signaling, Danvers, MA, USA), Anti-LAMP2 (PRS3627, Sigma-Aldrich, St. Louis, MO, USA), Anti-LAMP2 (ab13524, Abcam, Cambridge, UK), Anti-LC3 (SAB1305552, Sigma-Aldrich), Anti-LC3 (66139-1-lg, Proteintech, Rosemont, IL, USA), Anti-mTOR (#2972, Cell Signaling), Anti-Phospho-mTOR (Ser2481) (#2974S, Cell Signaling), Anti-Phospho-mTOR (Ser2448) (#5536, Cell Signaling), Anti-p62 (ab155686, Abcam), Anti-STX17 (HPA001204, Sigma-Aldrich).
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