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3 protocols using recombinant ifn a d

1

Recombinant RIG-I Protein Production

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Poly(dA:dT) (PO833) and ribavirin were purchased from Sigma-Aldrich and used at 500 ng/ml and 400 μM final concentration, respectively. Cyclic diguanosine monophosphate (cyclic-di-GMP) was purchased from BioLog Life Science Institute (Bremen, Germany) and used at a concentration of 1 μg/ml. Recombinant IFN-A/D was purchased from PBL Assay Science (Piscataway, NJ).
For production of recombinant RIG-I used in Fig. 2, the 3xFLAG-human RIG-I DNA sequence13 was amplified using forward primer 5′-actcgagttatggactacaaagaccatgacgg-3′ and reverse primer 5′-ttgcggccgctcatttggacatttctgctggatcaa-3′ and cloned into the pBacPAK-His3-GST plasmid. Recombinant 3xFLAG-human RIG-I was expressed as a GST-tagged protein in SF9 insect cells using a baculovirus expression system and purified in a single step by affinity chromatography using glutathione-sepharose matrix (GE Healthcare, Little Chalfont, United Kingdom). The protein was eluted by GST tag cleavage using 3C enzymatic digestion. A final polishing step was accomplished using a Superdex 200 10/300 GL column (GE Healthcare). Protein purity was verified by acrylamide gel electrophoresis, and protein yield was quantified using a Nanodrop apparatus (ThermoScientific, Waltham, MA).
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2

dsRNA/siRNA-Mediated Gene Silencing Assay

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4 × 104 cells per well were seeded on a 24‐well plate. One day later, 200 ng of Cy5‐labelled dsRNA‐RL or Cy5‐dsRNA‐GFP or 15 pmol siRNA‐GFP (Silencer GFP siRNA, Ambion) or 15 pmol siRNA control (Silencer negative control siRNA # 1, Ambion) or transfection reagent alone (mock) was transfected into cells using Lipofectamine 2000 (Invitrogen). To test the effect of IFN on dsRNA/siRNA‐mediated gene silencing, 200 U of recombinant IFN A/D (PBL Assay Science) was added at the time of seeding the cells. To block the IFN receptor, an anti‐IFNAR antibody (LEAF purified anti‐mouse IFNAR‐1 antibody, Biolegend) was included at 10 μg ml−1. An isotype‐matched irrelevant specificity antibody (LEAF purified mouse IgG1, k isotype control antibody, Biolegend) was used as a control. For analysis, cells were recovered by trypsinisation, washed in PBS and resuspended in FACS buffer (PBS, 1% FCS, 5 mM EDTA) containing the live/dead cell discriminator dye DAPI, as well as a fixed amount of fluorescent reference beads (Coulter CC Size standard L10, Beckman Coulter) in order to allow for flow cytometry‐based cell counting. Flow cytometric analyses were performed with an LSRFortessa (BD Biosciences) acquiring a sample size of 10,000 cells to meet statistical robustness. Data were analysed using FlowJo (Tree Star).
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3

Recombinant RIG-I Protein Production

Check if the same lab product or an alternative is used in the 5 most similar protocols
Poly(dA:dT) (PO833) and ribavirin were purchased from Sigma-Aldrich and used at 500 ng/ml and 400 μM final concentration, respectively. Cyclic diguanosine monophosphate (cyclic-di-GMP) was purchased from BioLog Life Science Institute (Bremen, Germany) and used at a concentration of 1 μg/ml. Recombinant IFN-A/D was purchased from PBL Assay Science (Piscataway, NJ).
For production of recombinant RIG-I used in Fig. 2, the 3xFLAG-human RIG-I DNA sequence13 was amplified using forward primer 5′-actcgagttatggactacaaagaccatgacgg-3′ and reverse primer 5′-ttgcggccgctcatttggacatttctgctggatcaa-3′ and cloned into the pBacPAK-His3-GST plasmid. Recombinant 3xFLAG-human RIG-I was expressed as a GST-tagged protein in SF9 insect cells using a baculovirus expression system and purified in a single step by affinity chromatography using glutathione-sepharose matrix (GE Healthcare, Little Chalfont, United Kingdom). The protein was eluted by GST tag cleavage using 3C enzymatic digestion. A final polishing step was accomplished using a Superdex 200 10/300 GL column (GE Healthcare). Protein purity was verified by acrylamide gel electrophoresis, and protein yield was quantified using a Nanodrop apparatus (ThermoScientific, Waltham, MA).
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