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Magnetic separation stand

Manufactured by Promega
Sourced in Italy

The magnetic separation stand is a laboratory equipment designed to facilitate the separation of magnetic particles from liquid samples. It provides a stable platform to hold sample tubes or plates during the magnetic separation process. The stand utilizes a strong magnetic field to attract and hold magnetic particles, allowing the liquid to be removed or exchanged while the particles remain in place.

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5 protocols using magnetic separation stand

1

Isolation of Proximal Tubules from Mouse Kidney

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Proximal tubules were isolated as described previously41 (link),42 (link) with several modifications. Briefly, mice were perfused through the thoracic aorta with 20 mL of a cold magnetic bead solution supplemented with 40 μL of Dynabeads M450 (14013, Invitrogen). Kidney cortex was collected and minced into 1-mm3 pieces, which were then digested in HBSS supplemented with 1 mg/mL collagenase I (LS004196, Worthington), 0.75 mg/mL trypsin inhibitor (T6522, Sigma), and 40 U/mL DNase I (D4513, Sigma) at 37 °C for 10 min on a rotator. This digestion step was performed twice and the suspension was passed through cell strainers from 100 to 45 μm to remove large cellular debris. Digested tissues on the cell strainer were collected with cold PBS, and washed three times in cold PBS. The filtrates were placed on a Magnetic Separation Stand (Promega) to remove glomeruli. The long segments of proximal tubules in suspension were used immediately in subsequent experiments.
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2

Glyphosate detection in beer samples

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20 µL of glyphosate-standard, control (diluent/zero standard solution), or beer sample solution, respectively, was pipetted into a 1.5 mL vial. In the same vial, 80 µL of assay buffer was added and the 100 µL solution was vortexed. Then, 8 µL of the diluted derivatization reagent was added and each vial vortexed immediately. Then, the derivatization reaction was allowed to proceed for 10 min. Meanwhile, the stock anti-glyphosate-IgG modified MBs suspension was mixed thoroughly. After 10 min, 200 µL of this stock MB suspension was added to each vial and briefly vortexed. After 30 min, 100 µL of glyphosate-enzyme-conjugate was added. Mixtures were vortexed and incubated for 30 min at room temperature. Each vial was then placed onto the magnetic separation stand (Promega, Milan, Italy) for 2 min to collect MB on the inner vial wall. The solution was then completely removed, and 400 µL of washing solution was added in each vial. The washing procedure was repeated twice with 200 µL and 100 µL of the washing solution, respectively, after which the vials were removed from the magnetic stand. 60 µL of the substrate solution was then added to each vial and, after 2 s of mixing, was allowed to incubate for 20 min. Finally, MBs were magnetically removed and the solution was completely transferred onto the electrochemical cell for chronoamperometric measurement.
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3

Immobilized Halted RNAP Complexes for Transcription Assays

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A linear template was generated by PCR of pIA349 using a top biotinylated primer and a bottom primer with an EcoRI recognition site. The template (8 pmoles) was incubated with EcoRIQ111 (3 μM; to achieve complete occupancy) in 40 μl BB (20 mM Tris-HCl, pH 7.9, 6% glycerol, 50 mM KCl, 5 mM MgCl2, 1 mM β-mercaptoethanol) for 15 min at 37°C. To form an immobilized halted G37 EC, holo-RNAP (8 pmoles), ApU (100 μM) and 5 μM each CTP, GTP and ATP were added together with 20 μl of prewashed Streptavidin coated magnetic beads (Dynabeads® MyOne Streptavidin C1) and incubated for 15 min at 37 °C. The halted complexes were washed three times with 500 μl of BB using a Magnetic Separation Stand (Promega). UTP was added at 5 μM for 5 min at 37 °C, followed by three washes. Then ATP, GTP, and CTP were added at 5 μM to form G42 (ops10) EC. The sample was divided into two aliquots; to one, 32P-labeled RfaH was added to 50 nM, and to the other 32P-labeled NusG was added to 470 nM, followed by a 5-min incubation at 37°C and three washes. Each reaction was split again into three aliquots: a) no further treatment; b) 5-min chase at 37°C with 100 μM NTPs; and c) 5-min chase at 37°C with 100 μM NTPs and 5 μM unlabeled NusG. After three washes with BB, samples were measured in a LS6500 Multi-Purpose Scintillation Counter (Beckman Coulter). The experiment was done in triplicates.
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4

Co-Immunoprecipitation Protocol for Protein Interactions

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Cells were rinsed with ice-cold Dulbecco’s Phosphate-Bufferd Saline (DPBS) twice before harvested with Co-IP buffer (50 mM Tris, pH 7.5, 150 mM NaCl, and 1% Triton X-100) supplemented with Roche complete protease inhibitor cocktail. The lysates were then rotated for an hour at 4 °C and subject to centrifugation (16,000×g, 15 min, 4 °C) to remove cell debris and nucleus. The supernatant was collected as the total cellular protein. Protein concentrations were determined by the MicroBCA assay (Pierce). Western blot analysis was performed using appropriate antibodies. Band intensities were quantified using the Image J software from the NIH.
Cell lysates (500 μg) were precleared with 30 μL of protein A/G Plus-agarose beads (Santa Cruz Biotechnology) and 1.0 μg of normal mouse IgG for 1 hat 4°C to remove nonspecific binding proteins. The precleared cell lysates were incubated with 30 μL mouse anti-Flag M2 magnetic beads (M8823, Sigma Aldrich) or normal protein A/G plus agarose beads (negative control for nonspecific binding) overnight at 4 °C. The magnetic beads were collected using a magnetic separation stand (Promega) and washed three times with Co-IP buffer. Flag-tagged proteins were eluted by incubation with 30 μL of SDS loading buffer in the presence of β-mercaptoethanol. The immunopurified eluents were separated in an 8% tris-glycine gel, and Western blot analysis was performed.
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5

Affinity Purification of GFP/HA/FLAG Fusion Proteins

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Leaves (2 g) of 4-week-old N. benthamiana or Arabidopsis plants were ground into fine powder in liquid nitrogen using a cold mortar and pestle. Total proteins were isolated using PEB as described above. After centrifugation, total proteins were filtered through a 0.2-mm filter and equal amounts of total protein (5-10 mg) extracted from different plants were incubated with 20 ml of GFP-Trap_MA (ChromoTek) beads with gentle rocking at 4 C overnight. The conjugated beads were collected using a magnetic separation stand (Promega) and were washed three times with 500 ml of washing buffer (10 mM Tris-HCl [pH 7.5], 150 mM NaCl, and 0.5 mM EDTA [pH 8.0]). Proteins were eluted from the beads by boiling for 10 min with 23 Laemmli Sample Buffer (Bio-Rad) with the additions of 100 mM DTT and 5% b-mercaptoethanol. GFP fusion proteins were detected by the anti-GFP primary antibody (1:3000 dilution) (Clontech), followed by the secondary antibody goat anti-mouse IgG-HRP (1:5000 dilution) (Thermo Fisher Scientific); hemagglutinin (HA) fusion proteins were detected by the antibody anti-HA-peroxidase (3F10) (1:500 dilution) (Roche); and FLAG fusion proteins were detected by the antibody anti-FLAG M2-peroxidase (1:3000 dilution) (Sigma-Aldrich).
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