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Celltrace calcein red orange am

Manufactured by Thermo Fisher Scientific
Sourced in United States

CellTrace calcein red-orange AM is a fluorescent dye used for labeling and tracking cells in various experimental applications. It is cell-permeant and upon hydrolysis by intracellular esterases, it becomes fluorescent and is retained within the cells, allowing for long-term cell monitoring. The dye exhibits red-orange fluorescence, making it suitable for use in multicolor labeling experiments.

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26 protocols using celltrace calcein red orange am

1

Evaluating Cell Proliferation and Viability

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In all cases, cell numbers and viability were confirmed by trypan blue staining after trypsinization. To evaluate proliferation and viability of the infected cells at different time points, hMPCs were cultured for 6 days. The cell proliferation reagent WST-1 (Roche) was used according to the manufacturer’s protocol. For further confirmation of cell viability hMPCs were stained with 10 μM CellTrace Calcein Red-Orange, AM (Life Technologies) for 30 min at 37 °C. Viable cells were detected using a fluorescence microscope. All measurements were performed in duplicates of at least 3 different human biopsies.
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2

Single-Cell DNA Extraction and Staining

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K562 cells (ATCC® CCL-243™) were cultured in high glucose Dulbecco's modified Eagle's medium (DMEM) (Gibco) supplemented with 10% Fetal Bovine Serum (FBS) (Gibco) and 1% penicillin-streptomycin (Gibco). HepG2 cells (ATCC® HB-8065™) were cultured in low glucose (1 g/l) DMEM (Gibco), 1% Glutamax (Gibco), 1% non-essential amino acids (NEAA) (Gibco), 10% FBS (Gibco) and 1% penicillin–streptomycin (Gibco). H1 ES cells was a gift from John Chua's lab. The cells were harvested, and the DNA was extracted using DNeasy blood and tissue kit (QIAGEN) for the low-input assays. DNA concentrations were quantified using Qubit dsDNA HS Assay Kit (Thermo Scientific) in Qubit 3.0 (Invitrogen). The cells were stained with CellTrace Calcein Red-Orange AM (Life Technologies), diluted in Phosphate Buffered Saline (PBS) (Gibco) to 1 cell/μl concentration and isolated in 0.2 ml PCR tubes for the single-cell assay. The tubes were observed under the microscope to confirm the presence of a single fluorescently stained cell.
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3

Cellular Staining and Dye Preparation

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CellTrace Calcein Red-Orange AM and trypan blue were purchased from Life Technologies. Sodium phosphate, DTT (dithiothreitol), PFA (paraformaldehyde), doxycycline, glycine, NaCl, imidazole, CaCl2, HEPES (4-(2-hydroxyethyl)-1-piperazineethanesulfonic acid), DMSO (dimethyl sulfoxide) and doxorubicin were purchased from Sigma-Aldrich. Leupeptin and pepstatin were purchased from Roche. PMSF (phenylmethanesulfonyl fluoride), and β-ME (β-mercaptoethanol) were purchased from Fisher Scientific. Fetal bovine serum (FBS), trypsin, penicillin, streptomycin, L-glutamine, PBS (phosphate buffered saline), and DMEM (Dulbecco’s modified Eagle medium) were purchased from GE Healthcare. Puromyocin was purchased from Clontech. Geneticin (G418) was purchased from Corning. 7-AAD (7-amino-actinomycin D) was purchased from Affymetrix eBioscience. Extrusion membranes were purchased from VWR. All chemical reagents were used without further purification.
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4

Cell Cytotoxicity Evaluation of Biomaterials

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Cells were cultured for 24 h with each of the two biomaterials and for 30 min in the presence of CellTraceCalcein Red-Orange AM (Life Technologies, Carlsbad, CA, USA) as indicated by the supplier. Samples were observed and digital images recorded using a Zeiss microscope equipped with a digital camera.
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5

Characterizing Latex-Cartilage Interactions

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To better characterize the interactions between latex and cartilage particles, cartilage particulates were labeled with 20μM dichlorotriazinylaminofluorescein (DTAF, Sigma-Aldrich)28 (link). FLS were plated at either a low or high density overnight before treatment with 250 fluorescently labeled cartilage particles, green-yellow or unlabeled latex beads (Sigma-Aldrich) per cell for 2 days on glass coverslips. Prior to imaging, synovial cells were stained with CellTrace™ Calcein Red-Orange AM (Life Technologies) to identify if particles were internalized or in contact with the cell surface. Alternatively, cells were cultured and fixed in 4% PFA overnight, permeabilized with 0.1% Triton X (Sigma-Aldrich) and washed with PBS. After blocking with 1% BSA in PBS, cells were stained with TRITC-conjugated Phalloidin (Millipore-Sigma) and counterstained with DAPI. Z-stack images were taken and reconstructed using a Zeiss LSM700 Confocal microscope (Zeiss, Oberkochen, Germany). For actin-DAPI stained images with latex particles, non-fluorescent latex beads were used to eliminate the effects of channel bleed-through. For quantification of cell-particle interactions and spatial characterization, 3 blinded reviewers each counted 170 cells and 108 cells cultured with cartilage and latex particles, respectively.
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6

Cell Cycle Analysis of 143B OS Cells

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After treatment with 2-ME, 143B OS cells were stained with a mixture of Hoechst 33342 (2.5 μg/ml) and Cell Trace™ Calcein Red-Orange AM (2.5 × 10−6 M) (Life Technologies, Poland) in a serum-free DMEM medium at 37°C for 30 min. The OS cells were rinsed with PBS and subjected to cell cycle analysis using an In Cell Analyzer 2000 (GE Healthcare, UK) equipped with a high performance CCD camera.
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7

Lung Microvascular Tumor Cell Adhesion

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Primary lung microvascular cells (175’000 cells) were plated on gelatin-coated μ-Slide I0.2 Luer (ibidi GmbH) and grown to confluence for 2 days. The endothelial monolayer was manually perfused five times with 2x105 of MC-38GFP cells in 100μl media. After 4 hours slides were perfused with CellTrace calcein-red-orange, AM (Life Technologies) stained bone marrow monocytes (2x106 cells/ml) in HEPES/Ringer solution supplemented with 25% washed red blood cells. Using air pressure pump system (ibidi) we applied a flow rate of 2 dyne/cm2. Mosaic images of slides were acquired using an inverted fluorescence microscope (Zeiss Axio Observer Z.1). Pictures were analyzed with ZEN software (Zeiss).
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8

Flow cytometry analysis of CD19 expression

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Nalm-6 cells were labeled with CellTraceTM Calcein Red-Orange-AM (Thermo-Fisher Scientific, maximum excitation/emission 577/590 nm) according to the manufacturer’s instructions. Afterward, for the CD19 antigen expression analysis, cells were incubated with the primary mouse anti-human CD19 antibody (Immunotools, Gladiolenweg, Friesoythe, Germany, final concentration 5 ng/μL). The secondary Alexa 488-conjugated anti-mouse antibody (2 ng/μL, Invitrogen, Carlsbad, CA, USA) was used to reveal bound antibodies. The cell viability and the antigen expression were evaluated by an Attune® NxT Acoustic Focusing flow cytometer (Thermo Fisher Scientific), acquiring 10,000 events; data were analyzed with Attune NxT Software. The same analysis was performed by immunofluorescence; cells were cytocentrifuged on a slide, and nuclei were stained with 4′,6-diamidino-2-phenylindole (DAPI, Sigma). Slides and images were analyzed, respectively, using fluorescence microscope Nikon Eclipse Ti-E live system and Image-J software (version 2.3.0/1.53f, GNU General Public License, Bethesda, MD, USA).
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9

Fluorescent Cell Staining Technique

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CellTraceTM Calcein Red-Orange, AM (C34851, Thermo Fisher), which fluoresces red was used for MASMC and Calcein, AM (C1430, Thermo Fisher), which fluoresces green was used for MECs in monolayers. Each dye was handled as per the companies’ instructions. Briefly, the monolayer was washed with PBS twice and dyes suspended in DMEM were added to the culture chamber and incubated for 40 min. Finally, cells were washed with PBS and imaged under an upright microscope (Olympus BX40).
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10

Neuronal Cell Viability Assays

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Viability of primary neuronal cultures was assessed with alamarBlue™ HS Cell Viability Reagent (Invitrogen, Thermo Fisher Scientific), based on the redox indicator resazurin. Neurons were incubated with Alamar Blue (10% v/v in culturing medium) at 37°C in humidified 95% air and 5% CO2 for 60 min. Fluorescence was measured with a microplate reader (Infinite M1000, Tecan, Maennedorf, Switzerland) with excitation wavelength of 560 nm and emission of 590 nm. Background from blank wells was subtracted and all values were normalized to averaged untreated control.
Single cell viability was assessed using CellTrace™ Calcein Red-Orange AM (Invitrogen) or Hoechst (Invitrogen) according to the manufacturer’s guidelines. In short, cell cultures were incubated for 30 min at 37°C with calcein AM or Hoechst at a final concentration of 1 μM and 5 μg/mL, respectively. After subsequent wash with phosphate-buffered saline (PBS) to minimize background fluorescence, neuronal cultures were imaged in transparent culture medium.
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