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Sybr green real time pcr mix

Manufactured by Qiagen
Sourced in Germany

SYBR Green Real Time PCR Mix is a ready-to-use solution for real-time PCR amplification and detection. It contains SYBR Green I dye, which binds to double-stranded DNA and emits fluorescence upon binding, allowing for the monitoring of the amplification process.

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8 protocols using sybr green real time pcr mix

1

RNA Isolation and qRT-PCR Analysis

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Total RNA was isolated using TRIzol (15596026, Invitrogen, USA). One μg total RNA was reversely transcribed in a total volume of 10 μl with ReverTra Ace qPCR RT Master Mix kit (FSQ-201, TOYOBO, Japan) following the vendor’s instructions. The cDNA was diluted 3 times, and 1 μl was used for real-time PCR in a 20-μl reaction using SYBR Green Real Time PCR Mix (204143, Qiagen, Germany). The PCR conditions were 95℃ for 2 min, followed by 40 cycles of 95℃ for 20" and 60℃ for 15". All primers are listed in Supplementary Table S1. The expression of target gene was normalized to that of GAPDH and calculated using the 2−ΔΔCt method.
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2

Quantitative Analysis of miRNA

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For miRNA analysis, total RNA from plasma, CdM or perfusate was extracted using miRNeasy Plasma Kit (Qiagen) per vendor's instructions. Two hundred and fifty nanograms of total RNA was reversely transcribed in 10 μL reaction using RevertAid First Strand cDNA Synthesis Kit (Thermo Fisher) and miR‐499‐, U6‐, or miR‐103a‐specific RT primer. The cDNA was diluted 2×, and 2 μL was used for qPCR in a 20 μL reaction using SYBR Green Real Time PCR Mix (Qiagen). The PCR conditions were the same as aforementioned. All primers were listed in Table S1. The PCR efficiency for each primer pair was between 95% and 105%. The expression of miRNA, normalized to that of U6 for cell lines and to that of miR‐103a for plasma, CdM and perfusate, was calculated using 2−∆∆Ct method.
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3

Quantitative Real-Time PCR Protocol

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Total RNA was isolated using TRIzol method. One μg of total RNA was reversely transcribed in a total volume of 10 μl with ReverTra Ace qPCR RT Master Mix kit (FSQ-201, TOYOBO, Japan) following manufacturer’s instructions. One μl of three-times diluted cDNA was used for real-time PCR in a 20 μl reaction using SYBR Green Real Time PCR Mix (204143, Qiagen, Germany). The PCR conditions were 95℃ for 2 min, followed by 40 cycles of 95℃ for 20’’ and 60℃ for 15’’. All primers used were listed in Supplementary Table S1. The expression of target gene was normalized to GAPDH and calculated using 2−ΔΔCt method as described previously (18 (link)).
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4

Quantitative Real-Time PCR Analysis

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Total RNA was isolated using Trizol method (Invitrogen). One μg of total RNA was reversely transcribed in a total volume of 10 μL with ReverTra Ace qPCR RT Master Mix kit (TOYOBO) following manufacturer's instructions. The cDNA was diluted three times, and 1 μL was used for real‐time PCR in a 20 μL reaction using SYBR Green Real Time PCR Mix (Qiagen). The PCR conditions were 95°C for 2 minutes, followed by 40 cycles of 95°C for 20’’ and 60°C for 10’’. All primers were listed in Table S1. The PCR efficiency for each primer pair was between 95% and 105%. The expression of target gene was normalized to that of GAPDH and calculated using 2−∆∆Ct method as described in BioRad's qPCR manual.
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5

RT-qPCR Protocol for Gene Expression

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Total RNA was isolated using TRIzol method (15596026, Invitrogen, USA). One microgram of total RNA was reversely transcribed in a total volume of 10 μl with ReverTra Ace qPCR RT Master Mix kit (FSQ-201, TOYOBO, Japan) following the manufacturer’s instructions. The cDNA was diluted 3 times, and 1 μl was used for real-time PCR in a 20-μl reaction using SYBR Green Real Time PCR Mix (204143, Qiagen, Germany). The PCR conditions were 95 °C for 2 min, followed by 40 cycles of 95 °C for 20″ and 60 °C for 15″. All primers are listed in Table 1. The expression of target gene was normalized to that of GAPDH and calculated using the 2-∆∆Ct method.
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6

Quantitative Real-Time PCR for Immune Gene Expression

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Quantitative real-time PCR (qPCR) was performed using SYBR Green real-time PCR mix (QuantiNova™, Qiagen™, Hilden, Germany) following the manufacturer’s instructions. For each sample, 3 µL of cDNA sample was added into 10 µL of 2X SYBR Green PCR master mix, 1.4 µL of each forward and reverse primers of immune-related genes (Table 3), and 1.2 µL of nuclease-free water into a PCR tube. Each cDNA sample group was prepared in triplicate. The samples were run in the Rotor-Gene Q real-time PCR machine (Qiagen™, Hilden, Germany). The resulting threshold cycle (CT) values were analyzed and recorded using Rotor-Gene Q software (Qiagen™, Hilden, Germany). The qPCR program was as follows: initial denaturation at 95 °C for 10 min, followed by 40 cycles of denaturation at 95 °C for 15 s, and annealing/elongation at 60 °C for 60 s. A melting curve was run for each primer set to confirm the reaction specificity. The relative expression of each immune-relative gene was determined by comparing it with the expression level of the β-actin gene as the housekeeping gene using the Livak method, 2−ΔΔCT method.
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7

Real-time PCR analysis of gene expression

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Total RNA was isolated using Trizol method (15596026, Invitrogen, USA). One μg of total RNA was reversely transcribed in a total volume of 10μl with ReverTra Ace qPCR RT Master Mix kit (FSQ-201, TOYOBO, Japan) following manufacturer's instructions. The cDNA was diluted 3 times, and 1 μl was used for real-time PCR in a 20 μl reaction using SYBR Green Real Time PCR Mix (204143, Qiagen, Germany). The PCR conditions were 95°C for 2min, followed by 40 cycles of 95°C for 20'' and 60°C for 15''. All primers were listed in supplement Table 1. The expression of target gene was normalized to that of GAPDH and calculated using 2 -∆∆Ct method.
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8

Quantitative Real-Time PCR Assay

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Total RNA was isolated using Trizol method (15596026, USA). One µg of total RNA was reversely transcribed in a total volume of 10 µl with ReverTra Ace qPCR RT Master Mix kit (FSQ-201, TOYOBO, Japan) following manufacturer's instructions. The cDNA was diluted 3 times, and 1 µl was used for realtime PCR in a 20 µl reaction using SYBR Green Real Time PCR Mix (204143, Qiagen, Germany). The PCR conditions were 95 °C for 2 min, followed by 40 cycles of 95 °C for 20'' and 60 °C for 15''. All primers were listed in supplement table 1. The expression of target gene was normalized to that of GAPDH and calculated using 2 -∆∆Ct method.
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