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12 protocols using ecl detection kit

1

Protein Extraction and Western Blot Analysis

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The protein was extracted by RIPA lysis buffer supplemented with protease inhibitor (1:50) and PMSF (1:100) (ZHHC Biotechnology, Xi’an, China). The supernatant was collected by centrifugation and the protein concentration was determined by the BCA method (Beyotime, Shanghai, China). A total of 30 ug of protein added to each lane was separated by SDS-PAGE gel and then transferred to an NC membrane. After blocking with 5% milk, the NC membrane was incubated with the primary antibody overnight at 4 °C. Rabbit anti-NRF2 (1:3000, Proteintech, 16396-1-AP, Wuhan, China), Rabbit anti-P62 (1:3000, Proteintech, 18420-1-AP, Wuhan, China), Rabbit anti-BECLIN1 (1:1000, Abcam, ab207612, Cambridge, UK), Rabbit anti-β-Actin (1:1000, Proteintech, 20536-1-AP, Wuhan, China), Rabbit anti-BCL-2 (1:1000, Proteintech, 12789-1-AP, Wuhan, China), Rabbit anti-BAX (1:3000, Proteintech, 50599-2-Ig, Wuhan, China) and Rabbit anti-LC3 (1:1000, Proteintech, 14600-1-AP, Wuhan, China) were used. After incubation with the peroxidase conjugated secondary antibody for 1 h at RT, the protein bands were detected with an ECL detection kit (YEASEN, Shanghai, China).
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2

Protein Expression Analysis in Ischemic Brains

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Western immunoblot analysis was used to assess protein expression of HIF-1α, VEGF, VEGFR2, and Notch1. Three rats of each group were sacrificed after anesthesia. Right brains tissues were removed immediately and stored at −80°C until analysis. The proteins were isolated from the ischemic cortex tissue after lysis in RIPA buffer (Beyotime, Shanghai, China), and protein determination was quantitated using a BCA Protein Assay kit (Beyotime, Shanghai, China). Denatured protein samples were separated by sodium dodecyl sulfate-polyacrylamide gels (SDS-PAGE) and transferred to polyvinylidene fluoride (PVDF) membranes. After blocking with 5% nonfat milk at room temperature for 1 h, the membranes were incubated with primary antibodies: rabbit polyclonal anti-HIF-1α (1 : 500, BIOSS) and rabbit polyclonal antibody anti-VEGF (1 : 500, BIOSS), overnight at 4°C. Then, after rinsing in TBST buffer for 5 min three times, the membrane was incubated with an anti-rabbit or anti-mouse horseradish peroxidase-conjugated secondary antibody (1 : 10000, Santa Cruz Biotechnology, Santa Cruz, CA) at room temperature for 2 h. Finally, the protein bands were visualized using enhanced chemiluminescence (ECL) detection kit (Yeasen Biotech, Shanghai, China) and were quantitatively analyzed by using ImageJ software (Rawak Software Inc., Germany).
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3

Western Blot Analysis of AFF4 and GAPDH

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Proteins were extracted using a radioimmunoprecipitation assay (Boster, China), and protein content was estimated using the bicinchoninic acid assay (Boster). They were electrophoresed in 10% sulfate-polyacrylamide gel. Subsequently, the proteins were transferred onto polyvinylidene fluoride membranes, washed with Tris-buffered saline with Tween 20, and blocked with 5% BSA blocking buffer at 37°C for 2 h. Then, primary antibodies, AFF4 (ab103586, Abcam, UK) and GAPDH (ab8245, Abcam), were incubated with the membranes overnight at 4°C, prior to incubation with secondary antibody (ab6721, Abcam) for 1 h at 37°C. The ECL detection kit (Yeasen, China) and ImageJ software (Version 1.48; NIH, USA) were used to visualize and determine the protein levels [27 (link)].
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4

Western Blot Analysis of EMT Markers

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Total proteins were extracted using RIPA lysis reagent (Beyotime, Shanghai, China) and the protein contents were measured via BCA kit (Beyotime, Shanghai, China) as per the instructions. Protein samples were separated through SDS-PAGE and transferred to polyvinylidene difluoride (PVDF) membrane (Millipore, MA, USA). After blocking, membranes were labeled with primary antibodies (anti-PTEN, 1:1000, ab245322; N-cadherin, 1:1500, ab19348; E-cadherin, 1:2000, ab133597; GAPDH, 1:2500, ab245355; Vimentin, 1:1000, ab92547; all purchased from Abcam, Cambridge, USA) overnight at 4 °C. Following TBST washing, the membranes were subjected to 2-h incubation with HRP-labeled secondary antibody (1:3000, ab205718) at ambient temperature. Protein band visualization was achieved with an ECL detection kit (Yeasen, Shanghai, China).
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5

Western Blot Quantification of Protein Targets

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Total proteins were extracted using radio-immunoprecipitation assay (RIPA) (Boster, Wuhan, China) and a bicinchoninic acid (BCA) protein assay kit (Boster, Wuhan, China) was used to estimate the protein concentration. The protein extract electrophoresed in a 10% sodium dodecyl sulfate–polyacrylamide gel electrophoresis (SDS-PAGE) at 80 V for 20 min and then 120 V for 1 h and then transferred to PVDF membranes (Biosharp, Shanghai, China) at 220 mA for 60 min. After repeated washing using tris-buffered saline containing Tween 20 (TBST) and blocking with 5% bull serum albumin (BSA) blocking buffer for 2 h at 37 °C, the PVDF membranes were incubated with primary antibodies anti-HNRNPC (1:4000), anti-GAPDH (1:5000), p-ErK(1:1500), t-Erk (1:1500), t-MAPK (1:1000) and p-MAPK (1:1500) overnight at 4 °C and then incubated with the secondary antibody of HRP-linked antibody (1:5,000, Abcam, Cambridge, MA, United States) for 1 h at 37 °C. Finally, the blots were visualized using the enhanced chemiluminescence (ECL) detection kit (Yeasen, Shanghai, China), and the relative protein abundance was measured by ImageJ image analysis software (version 1.44p, National Institutes of Health, United States). All primary antibodies were purchased from Proteintech, Wuhan, China.
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6

Western Blot Analysis of Osteopontin

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Cells were collected and resolved on ice with RIPA buffer. After that, the protein samples were separated in 10% polyacrylamide SDS-PAGE and transferred onto a polyvinylidene fluoride (PVDF) membrane [13 (link)]. After transferring, we blocked the PVDF membranes with 5% bovine serum albumin (BSA). We used osteopontin (Abcam, ab166709) and GAPDH (Cell Signaling Technology) as primary antibodies to incubate blocked membranes at 4°C overnight and horseradish peroxidase as the secondary antibody at room temperature. Finally, samples were detected by using the ECL detection kit (Yeasen Biotech Co., Ltd.) [14 (link)].
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7

Immunoblotting Protein Extraction and Quantification

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For immunoblotting assays, all proteins were extracted using RIPA buffer and quantified using BCA reagent (#20201ES90, Yeasen). Proteins were separated by SDS-PAGE and then transferred onto PVDF membranes (#IPVH00010, Millipore). After blocking in 5% bovine serum albumin (BSA, #36101ES80, Yeasen) and incubating with specific antibodies, the bands were visualized using the enhanced chemiluminescence (ECL) detection kit (#36208ES76, Yeasen), and analyzed by ImageJ software. All antibodies used in this study are provided in Supplementary Table S6.
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8

Western Blot and Cytokine Analysis of Macrophage Responses

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The total protein from RAW264.7 macrophages was obtained by using the RIPA buffer (Beyotime). A nuclear and cytoplasmic extraction kit (CWbiotech) was used to, respectively, obtain the cytosolic protein and nuclear protein. A total of 30 μg protein in each lane was prepared, followed by separating in a 10% polyacrylamide SDS-PAGE gel [30 (link)]. After transferring, the PVDF membranes were then blocked with 5% BSA, then incubated with different antibodies including NRF2, Histone H3, p-JNK, KEAP1, DRP1, p-ERK, FIS1, ZBTB20, p-p65, IκBα, p-p38, IRF3, p-IRF3, and GAPDH (Cell Signaling Technology) [31 (link)]. After the incubation, a secondary antibody with linked HRP (Cell Signaling Technology), an ECL detection kit (Yeasen Biotech Co., Ltd.), and a digital imaging system (Kodak) were used.
To detect the cytokines, including TNF-α, IL-6, and IFN-β, the macrophage supernatants were collected, followed by detection with ELISA kits (Neobioscience Technology Co., Ltd.).
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9

Protein Extraction and Quantification

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To extract total protein, cells were lysed in RIPA lysis buffer and centrifuged at 10,600 g for 15 min at 4°C. Plasma membrane protein was extracted using a cytoplasmic and membrane protein extraction kit (BB-31161, Bestbio, Shanghai, China). Proteins were separated by SDS-PAGE gel (8–10%) electrophoresis and transferred onto 0.2 μM PVDF membranes (Millipore EMD). After blocking for 2 h in 5% skimmed milk at room temperature, membranes were incubated overnight at 4°C with the following primary antibodies at the respective dilutions: SUR1 (1:3000), Kir6.2 (1:1000), Na+/K+-pump (1:1500), β-actin (1:2000), α-AMPK (1:1000), and phospho-AMPK (1:1000). After three 10 min washes with TBST, immunoblots were developed using an ECL detection kit (Yeasen Biotech Co., Shanghai, China) and then visualized with a ChemiDoc™ imaging system (Bio-Rad). Protein bands were quantified using ImageJ (NIH) and normalized to the corresponding controls. The Na+/K+ pump was used as the membrane portion control.
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10

Protein Expression Analysis in Cells

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RIPA buffer (Beyotime Biotechnology, Shanghai, China) was utilized to extract total protein, and protein concentration was determined using a BCA protein assay kit (Beyotime Biotechnology, Shanghai, China) as per instructions. The protein samples were separated by sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) and transferred onto PVDF membranes (Millipore, Billerica, MA). After blocking with the skimmed milk, the membrane was incubated using the following antibodies: E2F2 (Ab138515, Abcam), actin (ab8227, Abcam), E-cadherin (ab231303, Abcam), N-cadherin (ab76057, Abcam), vimentin (ab137321, Abcam) at 1 : 1000 dilutions at 4°C overnight. The membrane was washed with the TBST buffer and then incubated with HRP-conjugated secondary antibody under ambient temperature for 2 h. The protein bands were visualized using the ECL detection kit (Yeasen, Shanghai, China), with actin as the internal control.
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