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Diisopropylfluorophosphate dfp

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Diisopropylfluorophosphate (DFP) is a chemical compound used as a laboratory reagent. It is a colorless, volatile liquid with a strong odor. DFP is commonly used as an inhibitor for certain enzymes, particularly acetylcholinesterase. Its core function is to chemically interact with and temporarily deactivate target enzymes in controlled laboratory settings.

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17 protocols using diisopropylfluorophosphate dfp

1

Characterization of Isogenic Cell Lines

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HCT116, MCF7, HepG2, H1299, and Mia-PaCa2 cells were obtained from ATCC. p53−/−HCT116 cells were obtained from Vogelstein’s group [20 (link)]. All the cells in this study were used at below passage 20. All the cells and their derivatives were cultured in DMEM (Dulbecco’s modified Eagle’s medium, Invitrogen) supplemented with 10% fetal bovine serum (Gibco). H1299 cells that can inducibly express IRP1 or IRP2 under a tetracycline inducible system was previously generated [21 (link), 22 (link)]. Isogenic control and IRP2-KO p53−/−HCT116 and Mia-PaCa2 cells were previously generated [23 (link)]. Diisopropyl fluorophosphate (DFP) and Deferoxamine mesylate (DFO) were purchased from Sigma.
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2

Chemicals Used in Animal Treatments

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The following chemicals were used for animal treatments: pyridostigmine bromide (PB; Sigma Aldrich, St. Louis, MO), permethrin (PM; 29.5% cis/69.5% trans isomer; Chem Service Inc., West Chester, PA), diisopropylfluorophosphate (DFP; Sigma Aldrich), N-Diethyl-3-methylbenzamide (DEET; Sigma Aldrich), and corticosterone (CORT; Steraloids, Newport, RI). Lacto-N-fucopentaose III (LNFPIII) dextran conjugate was produced as previously described (Tundup et al., 2015 (link)). All additional chemicals and reagents used in this study, unless otherwise noted, were of analytical or higher grade and were obtained from Sigma Aldrich or Fisher Scientific (Hampton, NH).
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3

Diisopropylfluorophosphate (DFP) Stability Assay

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Diisopropylfluorophosphate (DFP) was purchased from Sigma Aldrich. A stock solution (5.46 mM), stored at − 20 °C, was diluted extemporaneously to 15 µM in 1% DMSO/E3 medium. Control zebrafish larvae were treated with 1% DMSO/E3 medium.
Measurement of DFP stability (see supplementary Materials & Methods).
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4

Animal Treatment Protocols: Chemicals Used

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The following chemicals were used for animal treatments: pyridostigmine bromide (PB; Sigma Aldrich, St. Louis, MO), N-Diethyl-3-methylbenzamide (DEET; Sigma Aldrich), corticosterone (CORT; Steraloids, Newport, RI), and diisopropylfluorophosphate (DFP; Sigma Aldrich). Lacto-N-fucopentaose III (LNFPIII) dextran conjugate was produced as in Carpenter et al. (2021) . All additional chemicals and reagents, unless otherwise noted, were of analytical or higher grade and obtained from Sigma Aldrich or Fisher Scientific (Hampton, NH).
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5

Genetic Manipulation and Treatment of Mgp-Deficient Mice

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Mgp+/− mice on the C57BL/6J background23 (link) were obtained from Dr. Cecilia Giachelli, University of Washington, with the permission of Dr. Gerard Karsenty, Columbia University. Cdh5Cre (B6.Cg-Tg(Cdh5-cre)7Mlia/J) and Sox2flox/flox (Sox2tm1.1Lan/J) mice were obtained from the Jackson Laboratory. Genotypes were confirmed by PCR21 (link), 24 (link), 25 (link), and experiments were performed with generations F4–F6. Littermates were used as wild type controls. All mice were fed a standard chow diet (Diet 8604, HarlanTeklad Laboratory). The studies were reviewed and approved by the Institutional Review Board and conducted in accordance with the animal care guideline set by the University of California, Los Angeles. The investigation conformed to the National Research Council, Guide for the Care and Use of Laboratory Animals, Eighth Edition (Washington, DC: The National Academies Press, 2011). Diisopropylfluorophosphate (DFP) (Sigma-Aldrich) and serpina1 (Origene) were injected via tail vein or retro-orbital injection (20–50 ng/g, daily) as in previous studies26 (link), 27 (link). Injections in Mgp−/− mice were started at 2 weeks of age, and continued for 2–4 weeks.
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6

Murine Neutrophil Protein Phosphorylation

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Protein expression and phosphorylation of target proteins were analyzed by western blotting. Murine neutrophils were stimulated at an MOI of 1:1 with fungal particles. Following incubation for 30 min at 37°C, cells were lysed with RIPA buffer (Sigma, St. Louis, MO, USA) or a nuclear/cytosol fractionation kit (ThermoFisher Scientific, Waltham, MA, USA). All lysis buffers contain final 2.5mM Diisopropyl fluorophosphate (DFP) (Sigma, St. Louis, MO, USA), 1x protease inhibitor cocktail (Roche, Basel, Switzerland) and 1x phosphatase inhibitor cocktail (ThermoFisher Scientific, Waltham, MA, USA). A total of 40 μg lysate was loaded on 4–12% SDS-PAGE gels (Invitrogen) and transferred to 0.2 μm PVDF membranes (Bio-Rad, Hercules, CA, USA). Protein lysates were equally loaded, and expression of each target protein and its phosphorylated form was measured by GelDoc imaging system (Bio-Rad, Hercules, CA, USA) and analyzed in ImageJ (NIH). Results are expressed in arbitrary units (a.u), which is a relative number for phospho-form of the target protein compared to the total expression of the target protein, normalizing using the unstimulated WT negative control as 1.
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7

Atherosclerosis Progression in ApoE-/- Mice

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ApoE−/− (B6.129P2-ApoEtm1Unc/J) mice were obtained from the Jackson Laboratory. Genotypes were confirmed by PCR (24 (link)) and experiments were performed with generations F4-F6. All mice were fed a standard chow diet (Diet 8604, HarlanTeklad Laboratory). At 8 to 10 weeks of age, all ApoE−/− mice were switched to a high-fat/high-cholesterol diet (Western diet) (Research Diets, New Brunswick, NJ, diet #D12108, containing 21% fat, 1.25% cholesterol) for 16 weeks. Diisopropylfluorophosphate (DFP) (Sigma-Aldrich), serpina1 (Origene) or Sox2 shRNA were injected via tail vein or retro-orbital injection (20–50 ng/g, daily) as in previous studies (13 (link)). Injections in ApoE−/− mice were started at 16 to 18 weeks of age, and continued for 8 weeks. The studies were reviewed and approved by the Institutional Review Board and conducted in accordance with the animal care guideline set by the University of California, Los Angeles. The investigation conformed to the National Research Council, Guide for the Care and Use of Laboratory Animals, Eighth Edition (Washington, DC: The National Academies Press, 2011).
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8

Purification of Factor IX Protein

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QuikChange was from Agilent. HEK293 cells were from ATCC. Cell culture media used were DMEM/F12 (Lonza) and Opti‐MEM I reduced serum medium with Glutamax supplement (Gibco; Thermo Fisher Scientific). Cell Factories and TripleFlasks were obtained from Thermo Fisher Scientific. Geneticin (G‐418 Sulfate) was from Calbiochem (Merck). Peptide‐IV (H‐SDDDWIPDIQTDPNGLSFNPISDFPDTTSPK‐OH)22 was provided by Thermo Fisher Scientific and coupled to CNBr‐Activated Sepharose 4 Fast Flow (GE Healthcare Life Sciences). A Fresenius Polysulfone low‐flux dialyser F5HPS (Fresenius Medical Care, Bad Homburg von der Höhe, Germany) was used as an artificial kidney. Diisopropyl fluorophosphate (DFP) and polyethylene glycol (PEG) 6000 were purchased from Sigma‐Aldrich. FIX was a kind gift from the late Dr. Walter Kisiel (Albuquerque, NM, USA). All materials for MS were obtained from Thermo Fisher Scientific, unless mentioned otherwise. For SDS‐PAGE NuPAGE Novex 4‐12% Bis‐Tris protein gels and Imperial protein stain were used (Thermo Fisher Scientific).
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9

Purification and Characterization of Butyrylcholinesterase

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Native BChE and mutated variants were purified from mouse serum collected after gene transfer of enzyme cDNA by adeno-associated viral vector (AAV 2/8, 1×1013 viral genomes delivered by tail-vein injection). After two weeks to reach maximal expression, the mice were euthanized by pentobarbital and blood was collected from the vena cava and heart. BChE protein was then enriched to ~ 90% purity by ammonium sulfate fractionation and separation on procainamide Sepharose affinity columns as previously described [24 (link)]. Certain experiments utilized >98% pure human BChE (O. Lockridge, Univ. Nebraska, Omaha, NE). Enzyme active sites were titrated with di-isopropyl fluorophosphate (DFP, Sigma) to determine final molar enzyme concentration as described previously [25 (link)].
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10

Synthesis and Characterization of Organophosphates

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Paraoxon, diisopropyl fluorophosphate (DFP), malathion and demeton-S-methyl (DSM) were purchased from Sigma-Aldrich (USA). Other general chemicals were also obtained from Sigma-Aldrich. p-Nitrophenyl diphenyl phosphate (PNPDPP) was synthesized at the Agency for Defense Development, Korea, as previously described [20 (link)].
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