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11 protocols using hmox1

1

Western Blot Analysis of Oxidative Stress Markers

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Western blot analysis was performed using a previously reported method63 (link). In brief, cytoplasmic and nuclear extracts were prepared using a Nuclear Extract Kit (Active Motif) according to the manufacturer’s instructions. Equal amounts of protein, as measured using a BCA protein assay kit, were mixed with 6 × SDS reducing sample buffer and boiled for 10 minutes before loading. The proteins (50 µg/lane) were then separated on an SDS polyacrylamide gel and transferred electronically to PVDF membranes. After the membranes were blocked with 5% nonfat milk in TTBS (50 mM Tris [pH 7.5], 0.9% NaCl, and 0.1% Tween-20) for 1 hour at room temperature, they were incubated with primary antibodies against MDA (1:200), 4-HNE (1:200), aconitase-2 (1:200), HMOX1 (1:200), COX2 (1:200), SOD1 (1:200), GPX1 (1:200), p38 (1:200) or p-p38 (1:200) (both from Abcam, Cambridge, CA), or β-actin (1:1000) (Santa Cruz Biotechnology, Santa Cruz, CA) overnight at 4 °C. After three washes with Tris-buffered saline with 0.05% Tween 20 for 10 minutes each, the membranes were incubated with HRP-conjugated goat anti-mouse IgG (1:1000) or goat anti-rabbit IgG (1:1000) for 1 hour at room temperature. The signals were then detected with a chemiluminescence reagent (ECL; GE Healthcare), and the images were acquired using an imaging station (model 2000R; Eastman Kodak, Rochester, NY).
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2

Astragaloside IV Antioxidant Pathway

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Astragaloside IV (> 98%) was purchased from Nanjing Spring & Autumn Biological Engineering (Nanjing, China) and stored in the dark at −20°C and then dissolved in dimethyl sulfoxide (DMSO) (Solarbio, Beijing, China). It was also diluted with complete medium prior to experimentation. H2O2 and t-BHQ were obtained from Sigma-Aldrich (St. Louis, MO, USA). Penicillin and streptomycin, Fetal bovine serum (FBS), and Dulbecco’s modified Eagle’s medium/nutrient mixture F-12 (DMEM/F-12) were obtained from Invitrogen-Gibco (Grand Island, NY, USA). Primary antibodies used targeted NFE2L2 (16396-1-AP, Proteintech, Chicago, IL, USA), NQO1 (11451-1-AP, Proteintech, Chicago, IL, USA), HMOX1 (ab13248, Abcam, Cambridge, UK), and β-actin (GB12001, Servicebio, Wuhan, China). GSH-Px, SOD, CAT, T-AOC, and MDA test kits were purchased from Nanjing Jiancheng Bioengineering Institute (Nanjing, China).
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3

Western Blot Analysis of Cellular Proteins

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Cell lysates were prepared by whole cell extract buffer (20 mM Tris pH 7.5, 400 mM NaCl, 10% Glycerol, 0.5% NP40, 0.1% SDS) and were subjected to sodium dodecyl sulfate-polyacrylamide gel electrophoresis (4%−12% Bis-Tris gel) and transferred to PVDF membrane or nitrocellulose (Figure 2). Protein concentrations were determined by Bradford or BCA protein assay reagent (Pierce, Rockford, IL). The PVDF membrane was incubated in a blocking buffer for 1 hour and then with a primary antibody (1:1000 dilution) overnight at 4 °C, followed by a HRP-conjugated secondary antibody (1:1000 dilution in blocking buffer). Proteins of interest were visualized with ECL western blotting substrate according to manufacturer’s instructions (GE Healthcare, Uppsala, Sweden). The following antibodies were used: KEAP1 (10503–2-AP, Protein Tech, Chicago, IL), NRF2 (2178–1, Epitomics, Burlingame, CA), HMOX1 (ab13243, Abcam, Cambridge, England), NQO1 (11451, Protein Tech, Chicago, IL), GCLM (sc22754, Santa Cruz Biotechnology, Dallas, TX), BRG1 (G7, sc17796, Santa Cruz Biotechnology, Dallas TX), BRM (ab15597, Abcam, Cambridge, England) and β-ACTIN (A2066, Sigma, St. Louis, MO).
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4

Comprehensive Antibody Characterization for Cellular Analyses

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The primary antibodies used were as follows: Actin (Sigma‐Aldrich, SAB5500001), ATG5 (Nanotools, clone 7C6), DAXX (Santa‐Cruz, clone M‐112), Flag (Sigma‐Aldrich, clone M2), GAPDH (Cell Signaling Technology, #2118), GFP (Cell Signaling Technology, #2956), HA (Abcam, ab9110), Halo (Promega, G9211), His (Santa‐Cruz, clone H‐3), HMOX‐1 (Abcam, ab137749), Keap1 (Proteintech, 10503‐2‐AP), LAMP1 (Cell Signaling Technology, #9091), LC3B (Cell Signaling Technology, #2775), MOAP‐1 (Sigma‐Aldrich, HPA000939), Myc (Santa‐Cruz, clone 9E10), NBR1 (Abnova, clone 6B11), Nrf2 (MBL International, clone 1F2), p62/SQSTM1 (Abcam, ab56416), TAK1 (Abcam, ab109526), Tom20 (Santa‐Cruz, clone F‐10), TRIM21 (Proteintech, 12108‐1‐AP), Tubulin (Santa‐Cruz, clone TU‐02), Ubiquitin (Santa‐Cruz, clone P4D1), Ubiquitin (linkage‐specific K63) (Abcam, ab179434), Ubiquitin (linkage‐specific K48) (Abcam, ab140601).
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5

Western Blot Analysis of Cell Lysates

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Western blots were performed on SDS protein lysates quantified by picogreen assay, as described10 (link). Lysates that contained 10,000 cells were resolved on SDS polyacrylamide gels, before transferring onto PVDF membranes and probing with primary antibodies overnight at 4 °C. Antibodies used: VCAM1 (AF643, R&D), THMB (Ab109189, Abcam), HMOX1 (Ab52947, Abcam), NFκB (#8242, Cell Signalling), NFκB pSer536 (#3033, Cell Signalling).
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6

Immunofluorescence Analysis of Apoptosis Markers

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Cells were fixed by 4% paraformaldehyde for 15 min, permeabilized with 0.1% Triton X-100 for 5 min and blocked with 5% bovine serum albumin (BSA) for 1 h. The samples were stained with primary antibodies against AIF (Santa Cruz Biotechnology, Santa Cruz, CA), p-Akt (pS473, Epitomics, Burlingame, CA), MnSOD, catalase, NQO1, Hmox1, Bad and Bax (abcam, Cambridge, MA) at a concentration of 1:100 overnight at 4°C, and then incubated with fluorescein-conjugated secondary antibodies (Santa Cruz Biotechnology) at 37°C for 30 min. The cells were then counterstained with 4’,6-diamidino-2-phenylindole (DAPI, Sigma-Aldrich). All staining was examined under a confocal laser-scanning microscope.
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7

Western Blot Analysis of Prostate Cancer Markers

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Cells were lysed in RIPA buffer (Beyotime, China) containing protease inhibitors (Complete Mini Ethylene Diamine Tetraacetic Acid-Free Protease Inhibitor Cocktail, Roche). The protein lysates were centrifuged, and the supernatants were collected for protein quantification with a Bicinchoninic Acid assay kit (Pierce, USA). Protein lysates were resolved with 8% to 10% sodium dodecyl sulfate–polyacrylamide gel electrophoresis (Beyotime, China), and were electrophoretically transferred to nitrocellulose filter membranes (Millipore). The membranes were then probed with antibodies against prostate-specific antigen (PSA) (1:1000; Cell Signaling Technology), AR (1:1000; Cell Signaling Technology), TSG101 (1:1000; System Biosciences), HSP70 (1:1500; System Biosciences), Alix (1:1000; System Biosciences) and HMOX1 (1:1000; Abcam). GAPDH (1:800; Cell Signaling Technology) and β-actin (1:1000; Cell Signaling Technology) were used as loading controls. After incubation with horseradish peroxidase (HRP)–conjugated goat anti-rabbit immunoglobulin G or HRP-conjugated goat anti-mouse immunoglobulin G secondary antibodies, the proteins were observed with the ChemiDoc XRS+ system (Bio-Rad, USA).
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8

Protein Extraction and Immunoblotting from Snap-Frozen Tissues

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Whole-tissue protein extracts were prepared from snap frozen organs. Briefly, 300 µl of lysis buffer (25mM Tris-HCl pH 7.4, 150mM NaCl, 5mM EDTA, 1% Nonidet P40, 0.5% sodium deoxycholate, 0.1% SDS) supplemented with protease inhibitors and phosphatase inhibitors)
was added per 100mg of tissue and homogenized using a Polytron PT2100 benchtop homogenizer rotor. After 30 min on ice, the resulting lysate was centrifuged for 15 min at 13200 rpm on an Eppendorf tabletop centrifuge at 4 o C. Supernatant was recovered and protein concentrations were measured by Bradford assay kit (Biorad). SDS-PAGE and immunoblotting was carried out as previously described [40] . Antibodies used included hmox1 (Abcam, ab13243), β-gal (Promega, Z3781), p21 (BD Pharmingen, 556431), NQO1 (Ab2346), GAPDH (Cell signaling, 2118).
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9

Ferroptosis Induction and Analysis

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Cell culture-tested ferric ammonium citrate (FAC) was purchased from Hi-Media. 5-Florouracil (5-FU), MTT, trypan blue, fetal bovine serum (FBS), RSL3, Ferrostatin (Ferro)-1, Deferoxamine (DFO), carbobenzoxy-valylalanyl-aspartyl-[O-methyl]-fluoromethylketone (Z-VAD-FMK), Bradford reagent for protein estimation, and streptomycin-penicillin solution were procured from Sigma-Aldrich (St. Louis, USA). Apoptosis detection annexin V and FITC kit, Propidium iodide (PI) staining kit for cell cycle analysis, and JC-1 staining for mitochondrial membrane potential detection kit were purchased from Abcam. Antibodies such as poly (ADPribose) polymerase 1 (PARP1), caspase-3, caspase-9, survivin, cyclin D1, p27, C-Myc, p21, Bcl-xL, Bak, Bax, and Bcl-2 were purchased from cell signal technology, whereas iron metabolism associated antibodies IRP-1, HMOX-1, TFRC, Hepcidin, and FTH1 were purchased from Abcam. Cell culture medium Roswell Park Memorial Institute (RPMI)-1640 was procured from Gibco Life Technologies (Waltham, USA).
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10

Evaluating Protein Expression Levels in Cell Lines

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The cell lines HOSEpiC, A2780, HO8910 and SKOV3 were lysed on ice with cell lysis buffer IP (Beyotime Institute of Biotechnology) containing protease inhibitors for total protein extraction. Western blotting was performed as previously described (3 (link)). Protein expression levels were evaluated using enhanced chemiluminescence ECL reagent (Gene Tech Co., Ltd.). Densitometric analysis was performed using ImageJ software (version 1.8.0; National Institutes of Health) and normalized to the internal control β-actin. The primary antibodies used were as follows: XBP1 (1:1,000; rabbit polyclonal; cat. no. ab198999; Abcam), HMOX1 (1:500; mouse monoclonal; cat. no. sc-136960; Santa Cruz Biotechnology, Inc.), p-p38 (1:1,000; rabbit monoclonal; cat. no. D3F9; Cell Signaling Technology, Inc.), p38 (1:1,000; rabbit monoclonal; cat. no. 3042S; Cell Signaling Technology, Inc.), p53 (1:500; mouse monoclonal; cat. no. sc-126; Santa Cruz Biotechnology, Inc.), Bcl2 (1:1,000, rabbit polyclonal; cat. no. 12789-1-AP; ProteinTech Group, Inc.) and β-actin (1:5,000; mouse monoclonal; cat. no. 60008-1-Ig; ProteinTech Group, Inc.). The secondary antibodies were as follows: Anti-mouse IgG-HRP (1:5,000; goat polyclonal; cat. no. sc-2005; Santa Cruz Biotechnology, Inc.), anti-rabbit IgG-HRP (1:5,000; goat polyclonal; cat. no. sc-2004; Santa Cruz Biotechnology, Inc.).
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