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Anti p p65

Manufactured by Cell Signaling Technology
Sourced in United States, China, United Kingdom

Anti-p-p65 is a primary antibody that recognizes the phosphorylated form of the p65 subunit of the NF-κB transcription factor. It is a tool used in research applications to detect and study the activation of the NF-κB signaling pathway.

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94 protocols using anti p p65

1

Western Blot Analysis of Signaling Proteins

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The whole cells were washed and lysed in RIPA buffer (89900, Thermo Scientific) supplemented with PMSF (phenylmethylsulfonyl fluoride) and protease inhibitors. Protein concentrations were determined with a BCA assay kit (Pierce, Rockford, IL, USA). Then the lysates were mixed with loading buffer, analyzed by 10% sodium dodecyl sulfate–polyacrylamide gel electrophoresis and then transferred onto polyvinylidene difluoride membranes (Millipore, Billerica, MA). After blocked with 5% skim milk in TBST at room temperature for 1 h, the membranes were incubated with different primary antibodies, including anti-DDX54 (1:1000, Proteintech, China), anti-P65, anti-p-P65, anti-AKT, anti-p-AKT, anti-mTOR, anti-p-mTOR, (1:1000, Cell Signaling Technology, Danvers, MA, USA), and anti-GAPDH (1:5000, Yeason, China) in 5% milk/TBST buffer at 4°C overnight, and then probed with horseradish peroxidase-conjugated anti-mouse or anti-rabbit IgG (1:5000, Jackson Immunoresearch Laboratories, West Grove, PA, USA) for 1 h. After washing three times with TBST, the membrane was developed with enhanced chemiluminescent plus substrate (Merck Millipore, Billerica, MA, USA), and the signal was recorded by Fluorchem E System (ProteinSimple, Santa Clara, CA, USA).
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2

Western Blot Analysis of Signaling Pathways

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First, hBMMSCs were washed with cold PBS softly for three times. After that, the cells were lysed in radioimmunoprecipitation assay (RIPA) buffer supplemented with 1% phosphatase inhibitor (Roche) and 2% protease inhibitor cocktail (Roche). After collecting and centrifugation of the cell lysate at 13362g at 4 °C for 30 min, supernatants were carefully transferred to new tubes, and the BCA protein assay kit was used to determine the protein concentrations. Thirty-five-microgram total protein of each sample was subjected to 10% SDS-PAGE. Proteins were transferred to a polyvinylidene fluoride membrane (Millipore, Billerica, MA, USA) after electrophoresis. The membrane was then blocked with 5% nonfat milk and then incubated with anti-IκBα (Abcam, Cambridge, UK), anti-p-IKK, anti-p-IκBα, anti-p-P65, anti-P65, anti-RUNX2, or anti-GAPDH (Cell Signaling Technology, Beverly, MA, USA) in TBS at 4 °C overnight. After that, the membrane was washed with Tris-buffered saline-Tween 20 (TBST) buffer for 3 times and then incubated with goat anti-rabbit IgG (Abcam). After that, the membrane was washed with TBST buffer again. Lastly, an ECL Western blot kit (CWBIO) was used to visualize the bands.
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3

PPARα Agonist Wy-14,643 Apoptosis Study

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PPARα agonist Wy-14,643 was a gift from Janardan Reddy, Northwestern University, Chicago, IL, USA. Anti-caspase-3, anti-cleaved PARP, anti-pp65, anti-pBAD and anti-BAD antibodies were obtained from Cell Signaling Technology (Beverly, MA, USA). Anti-actin antibody was obtained from Santa Cruz Biotechnology (Santa Cruz, CA, USA). Anti-p21 antibody was purchased from BD Biosciences (San Jose, CA, USA). The TUNEL staining kit was obtained from Promega (Madison, WI, USA).
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4

Breast Cancer Protein Expression Analysis

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Proteins isolated from breast cancer cells and mammospheres were separated by 10% SDS-PAGE and transferred to a polyvinylidene fluoride (PVDF) membrane (EMD Millipore, Burlington, MA, USA). The blots were blocked in 5% skim milk in 1X PBS-Tween 20 at room temperature for 60 min and then incubated overnight at 4 °C with primary antibodies. The antibodies were anti-JAK2, anti-Stat3, anti-p65, anti-pp65, anti-lamin B, anti-phospho-Stat3 (Cell Signaling, Danvers, MA, USA), and anti-β-actin (Santa Cruz Biotechnology, Dallas, TA, USA) antibodies. After washing, the blots were detected with IRDye 680 RD and 800 CW secondary antibodies, and images were detected by using ODYSSEY CLx (LI-COR, Lincoln, NE, USA).
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5

Immunohistochemical Analysis of Mouse Joints

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Mouse joint and knee tissues were sectioned into 5 μm thick samples. Antigen retrieval was performed by incubating the section with 0.1% trypsin for 40 min at 37°C or with citrate buffer (pH 6.0) for 20 min at 95°C. Anti‐CD90.2 (140 301; BioLegend), anti‐CCL2 (ab25124, Abcam, Cambridge, UK), anti‐ CXCL1 (LS‐B13384; LifeSpan BioSciences, Inc. Seattle, WA, USA), anti‐IL‐6 (ab9324, Abcam), anti‐COX2 (SC‐1745, Santa Cruz Biotechnology, Dallas, TX, USA), anti‐MMP3 (ab52915, Abcam), anti‐MMP13 (ab51072, Abcam), anti‐elastase (Ab21593, Abcam), anti‐CD68 (ab31630, Abcam), anti‐pp65 (3033, Cell Signaling Technology) and anti‐cleaved caspase 3 (9664s, Cell Signaling Technology) were used in the analysis. All immunohistochemistry signals were quantified by ImageJ software v1.60 (NIH, Bethesda, MD, USA).
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6

Western Blot Analysis of Osteogenic Markers

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Total proteins were extracted with lysis buffer (10 mM Tris-HCL, 1 mM EDTA, 1% sodium dodecyl sulfate, 1% Nonidet P-40, 1:100 proteinase inhibitor cocktail, 50 mM b-glycerophosphate, and 50 mM sodium fluoride). Aliquots of 20–60 mg per sample were separated by 10% sodium dodecyl sulfate-polyacrylamide gel electrophoresis, transferred to the polyvinylidene fluoride membranes and blocked with 5% nonfat milk powder in PBST (PBS with 0.1% Tween). Next, they were incubated with the following primary antibodies overnight: anti-Osterix, anti-Runx2, anti-ALP, anti-P65, anti-p-P65, anti-IKBα, anti-IKK, anti-p-IKK (Cell Signaling Technology). The membranes were then incubated with horseradish peroxidase-conjugated anti-mouse or anti-rabbit IgG secondary antibodies (Boster, Wuhan, China). The blots were visualized using an enhanced chemiluminescence kit (Amersham Biosciences, Piscataway, NJ, USA) according to the manufacturer’s recommended instructions.
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7

Andrographolide Modulates Inflammatory Pathways

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OVA, LPS and Andrographolide were purchased from Sigma-Aldrich (St. Louis, MO). Water-soluble Andrographolide sulfonate (Xi-Yan-Ping Injection) was provided by Jiangxi Qingfeng Pharmaceutical Co., Ltd. ELISA kits for TNF-α, IL-6, IL-4 and IL-1β were purchased from Dakewei (Beijing, China). Anti-phosphorylation of p65 and anti-p-p65 were purchased from Cell Signaling Technology (Beverly, MA). Anti-NLRP3 and anti-CASP1 (3345-1) were purchased from Epitomics. Anti-ASC and anti-Actin (sc-1616) were purchased from Santa Cruz Biotechnology (Santa Cruz, CA). Anti-mouse CD3-FITC, CD11b-PE and CD11c-APC antibodies were bought from eBioscience. GTVisin™ anti-mouse/anti-rabbit immunohistochemical analysis KIT was purchased from Gene Company (Shanghai, China). All other chemicals were obtained from Sigma-Aldrich (St. Louis, MO).
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8

Antibody Panel for Protein Analysis

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The following primary antibodies were used in this study: anti-TNFR1 (1:2,000, rabbit, Abcam), anti-ANXA1 (1:1,000, goat, Santa Cruz), anti-Ki-67 (1:50, mouse, Abcam), anti-P65 (1:2,000, rabbit, Cell Signaling Technology), anti-p-P65 (1:1,000, rabbit, Cell Signaling Technology), anti-Akt (1:2,000, rabbit, Cell Signaling Technology), anti-p-Akt (S473) (1:1,000, rabbit, Cell Signaling Technology), anti-p-Akt (T308) (1:1,000, rabbit, Cell Signaling Technology), anti-GAPDH (1:5,000, mouse, Abcam), anti-α-tubulin = (1:5,000, mouse, Abcam), anti-Lamin B (1:2,000, mouse, Santa Cruz), anti-HA (1:5,000, mouse, Cell Signaling Technology), and anti-Flag (1:5,000, rabbit, Cell Signaling Technology).
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9

Western Blot Analysis of Protein Expression

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The brain tissues of mice and cells were homogenized in lysis buffer containing protease inhibitors. The homogenate was centrifuged at 14000 g for 15 min at 4°C and the protein concentration was determined using the BCA kit. 30 μg lysate was loaded onto 10% SDS-PAGE. The proteins were transferred to PVDF membranes (Millipore, MA, USA). The membranes were blocked for 1 h in 5% dry milk and then incubated overnight with one of the following primary antibodies: anti-iNOS (ab178945), anti-Pro-caspase-1 (ab179515), anti-ANT (ab102032), anti-Cyp D (ab16045) (Abcam, Cambridge, MA, USA), anti-TH (#2792), anti-COX2 (#12282), anti-p-p65 (#3033), anti-Cleaved-caspase-1 (#89332), anti-Cyto C (#4280), anti-VDAC (#4866), anti-COX4 (#4850), or anti-β-actin (#3700) (Cell Signaling Technology, Beverly, USA). After washing 3 times in TBST for 5 min each, the membranes were incubated with goat anti-mouse, anti-rabbit, or anti-rat HRP for 1 h at room temperature. Then, the membranes were washed 3 times in TBST for 5 min each. The signal was visualized using an ECL chemiluminescence kit (Amersham Biosciences/GE Healthcare; Piscataway, NJ).
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10

Molecular Mechanisms in Inflammatory Signaling

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The antibodies included anti-S100A9 (Cat no. ab92507; Abcam), anti-TLR4 (Cat no. sc-293072; Santa Cruz Biotechnology), anti-RAGE (Cat no. sc-80653; Santa Cruz Biotechnology), anti-p38 (Cat no. 9212; Cell Signaling Technology), anti-p65 (Cat no. 3034; Cell Signaling Technology), anti-ERK1/2 (Cat no. 4695; Cell Signaling Technology), anti-JNK (Cat no. 9253; Cell Signaling Technology), anti-AKT (Cat no. 8596; Cell Signaling Technology), anti-phospho(p)-p38 (Cat no. 4511; Cell Signaling Technology), anti-p-p65 (Cat no. 3033; Cell Signaling Technology), anti-p-ERK1/2 (Cat no. 3510; Cell Signaling Technology), anti-p-JNK (Cat no. 4668; Cell Signaling Technology), anti-p-AKT (Cat no. 9271; Cell Signaling Technology), anti-CD8 (Cat no. 340046, BD), anti-HLA-DR (Cat no. 4310370, eBioscience), anti-CD33 (Cat no. 4296343, eBioscience) and CD11b (Cat no. 4291932, eBioscience), and horseradish peroxidase-conjugated anti-mouse, anti-rabbit IgG antibodies. The inhibitors contained TAK-242 (MedChemExpress, New Jersey), FPS-ZM1 (MedChemExpress, New Jersey), SB203580 (Beyotime) and BAY 11-7082 (Beyotime). The preparation of the recombination GST-S100A9 protein, as well as its control protein GST, have previously been described (21 (link)).
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