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38 protocols using af3626

1

Characterizing IL-33 Expression in Lungs

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Lungs of Wt and Pla2g5-null mice were excised and immersed in RPMI. Within 1h of surgery, the tissue was removed from RPMI and fixed in 4% paraformaldehyde, then embedded in Tissue-Tek® O.C.T.™ Compound (Sakura Finetek), and kept at −80°C until sectioning. Sections of 5-μm thickness were freshly cut, thaw-mounted onto slides, and stained for confocal microscopy. Frozen sections were rehydrated for 1h at RT then blocked with 10% donkey serum, followed by incubation with goat polyclonal IL-33 (AF3626, R&D Systems) and rabbit polyclonal proSPC (AB3786, Millipore, Temecula, CA) antibodies or appropriate isotypes controls at 4°C, overnight. Samples were washed, incubated at RT for 1h with appropriate secondary antibodies, washed and covered with Fluoroshield mounting media (Electron Microscopy Sciences, Hatfield, PA). Sections were imaged using a Nikon C1 plus laser scanner confocal system with a 40× oil Plan-Fluor NA1.3 objective lens. 8–10 Z-stack images of 0.5 μm were acquired through a small pinhole using Nikon EZ-C1 software. Images were analyzed using Image J (U.S. National Institute of Health, Bethesda, MD).
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2

Immunostaining of Embryonic Thymus

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Embryonic thymus was dissected and fixed in 4% PFA at 22°C for 30 min before soaking overnight at 4°C in 30% sucrose PBS solution. Samples were embedded in gelatine, flash-frozen and sectioned to 20 μm on Superfrost Plus slides (Thermo Fisher Scientific). For IL-33 staining, sections were permeabilized, stained overnight at 4°C with anti-IL-33 (AF3626, R&D Systems), then for 1 h at 22°C with donkey anti-goat IgG AF647 antibody (ab150131, Abcam). Sections were mounted using Prolong Gold (Thermo Fisher Scientific). Images were obtained with a 20x objective lens using a Zeiss 780 inverted confocal microscope with Zen software (version 14.0.19.201, configuration 6.00.00). Sequential laser scanning was used to minimize spillover between fluorescent proteins.
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3

Immunohistochemical Analysis of IL33 Expression

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Tissues were fixed in paraformaldehyde (Fisher Scientific) for 24 hours and embedded in paraffin. The tissue sections were deparaffinized with EZPrep buffer (Ventana Medical Systems), then antigen retrieval was performed with CC1 buffer (Ventana Medical Systems). Sections were blocked for 30 minutes with Background Buster solution (Innovex), followed by avidin-biotin blocking for 8 minutes (Ventana Medical Systems). Mouse IL33 (AF3626, R&D Systems), mouse smooth muscle actin (Abcam), and human IL33 (AF3625, R&D Systems) antibodies were applied, and sections were incubated for 4 hours, followed by a 60-minute incubation with biotinylated rabbit anti-goat IgG (Vector labs), or biotinylated goat anti-rabbit IgG (Vector labs) at 1:200 dilution. Detection was performed with DAB detection kit (Ventana Medical Systems) according to the manufacturer’s instructions. Any section containing cells demonstrating cytoplasmic or nuclear positivity for IL33 was designated to have positive staining. Slides were counterstained with Masson’s trichrome, or hematoxylin, and eosin,and cover-slipped with Permount (Fisher Scientific).All histologic sections were evaluated by an independent PDAC pathologist.
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4

Immunofluorescent Staining of IL-33 in Mouse Stomach

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Paraffin-embedded stomach sections were dewaxed, rehydrated and antigen-retrieval was performed by heating in EDTA buffer (pH9) for 15 min in microwave pressure cooker. Section were incubated for 1 h at room temperature with goat anti-mouse IL-33 (1:150 dilution, R&D Systems, Cat# AF3626, RRID:AB_884269) and then for 1 h with AlexaFluor 568-conjugated donkey anti-goat secondary antibody (Molecular Probes Cat# A-11057, RRID:AB_142581). After counter staining with spectral DAPI (1:200 dilution, PerkinElmer, Cat# FP1490) for 5 min, sections were mounted with Vectashield mounting solution (VECTORlabs, Cat# H-1400). Imaging was preformed with a Vectra 3.0 Automated Quantitative Pathology Imaging System (PerkinElmer, Cat# CLS142338) and representative images were produced using PhenochartTM v1.0.4 software (PerkinElmer).
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5

Western Blot Analysis of Cellular Proteins

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Total protein extracts were prepared by homogenizing samples in lysis buffer (50 mmol/L Tris, 150 mmol/L NaCl, 2 mmol/L EDTA, 2 mmol/L EGTA, 0.2% Triton X-100, 0.3% NP-40, 0.1 mmol/L PMSF, 25 mmol/L NaF). For nuclear extracts, the NE-PERTM nuclear and cytoplasmic extraction kit (Pierce, Thermofisher Scientific) was used according to the manufacturer’s instructions. Proteins were separated by SDS-PAGE under reducing conditions and then blotted onto nitrocellulose membranes. Membranes were blocked with 5% defatted milk in TBS-T (0.05 mol/L Tris, 0.15 mol/L NaCl, 0.05% Tween 20, pH 7.8). Thereafter, membranes were probed overnight at 4 °C with primary antibodies in the same blocking solution or 5% BSA in TBS-T and then incubated with secondary HRP-conjugated antibodies for 1 h at room temperature. Primary antibodies were: phospho-MLKL (1/500; ab196436; Abcam, Inc.); cleaved caspase-8 (1/1000, 8592, Cell Signaling Technology); p-cJUN (1/1000, 3270, Cell Signaling); cleaved IL-33 (1/1000; AF3626; R&D Systems), heme oxygenase-1 (HO-1, 1/2000, ADI-OSA-150-D, Enzo) and p65 (1/1000, 8242, Cell Signaling Technology). Total protein content for loading controls was assessed with Ponceau Red or by means of the fluorescence incorporated into tryptophan amino acids of proteins samples ran in Stain-FreeTM gels (BioRad).
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6

Neutrophil, Monocyte, T-cell, and Eosinophil Migration Assay

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Bone marrow-derived neutrophils (5×105), monocytes (5×105), T cells (1×106), and eosinophils (5×105 cells) were placed at the upper chamber of 24-transwell membrane plates (Corning; CA-3415, CLS3421 or CA-3422). Migration assays were performed with 5μm pore (neutrophils), 8μm pore (monocytes) or 3μm pore transwell inserts (T cells and eosinophils). Lung homogenate supernatant from normal or metastases-bearing lungs was placed at the bottom chamber. Neutralizing anti-IL-33 antibody (0.2μg/ml AF3626, R&D systems) was added and migrated cells were counted by cell counter.
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7

Lung IL-33 and TSLP Expression

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To analyze IL–33 and TSLP expression in the lungs section, the following antibodies were used for immunostaining: mouse IL–33 (0.2 mg/ml, AF3626, R&D Systems, Minneapolis, MN); mouse TSLP biotinylated (0.2 mg/ml, BAF555, R&D Systems) and respective isotype controls (R&D Systems). IL–33 and TSLP antibody–antigen complex were detected using Cy3 donkey anti–goat IgG (1:10000) (Invitrogen/ Molecular probes, Grand Island, NY). Slides were counterstained with DAPI (Vector Labs, Burlingame, CA). Images were obtained using a Nikon A1R si microscope.
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8

Modulation of Temperature Tolerance

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Mice at denoted ages were administered one dose of vehicle (5% DMSO), imatinib (5 mg/kg; Sigma: SML1027) or SU16f (2 mg/kg; Tocris Bioscience: 3304) dissolved in 5% DMSO 1XPBS solution for 5 consecutive days via IP injection. Recombinant Pdgf-BB or IL-33 were administered to young mice at one dose of vehicle (1X PBS), Pdgf-BB (25 ng/mouse; PeproTech: 315-18), or IL-33 (12 µg/kg; PeproTech 210-33) for 5 consecutive days via IP injection. For anti-IL-33 neutralizing antibody experiments, TMX-induced 12-month-old mice were administered one dose of mouse IgG control (1 µg/mouse; Invitrogen 31903) or anti-IL-33 antibody (1 µg/mouse; R&D systems AF3626) by IP injection for 5 consecutive days. Subsequently, mice were cold temperature challenged. For fludarabine treatments, mice at denoted ages were randomized to one dose of vehicle (5% DMSO) or fludarabine (3 mg/kg; Tocris Bioscience: 3495) for 5 consecutive days via IP injection.
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9

Modulating Endometriosis with IL-33

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Endometriosis was induced in C57BL/6 mice as described above. All mice were treated with i.p. injections of exogenous recombinant mouse IL-33 at 1 μg per mouse (Biolegend, 580506) at the same dosing schedule as above; however, experimental mice were also in tandem treated i.p. with goat anti-mouse IL-33 antibody at 2.5 μg per mouse (R&D Systems, AF3626) and appropriate isotype control (R&D Systems, AB-1080C). The same processing for tissue harvest was conducted.
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10

Anti-IL-33 Antibody Impacts Tumor Development

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Control IgG and anti-IL-33 antibody (AF3626) were obtained from R&D Systems. For the in vivo experiments, the control antibody or the anti-IL-33 antibody were administered intraperitoneally once per week at a dose of 3 µg/mice starting 16 weeks after DMBA exposure [15 ]. The mice were euthanised 17 weeks after the first PMA cycle, and tumours were harvested for analysis.
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