The largest database of trusted experimental protocols

38 protocols using neubauer chamber

1

Stallion Semen Cryopreservation with AQP Inhibitors

Check if the same lab product or an alternative is used in the 5 most similar protocols
A total of 12 ejaculates coming from different stallions (n = 12) were used. Animals were housed at the Equine Reproduction Service, Autonomous University of Barcelona (Spain), which is a European Union (EU)-approved equine semen collection center (Authorization code: ES09RS01E) that operates under strict protocols of animal welfare and health control. Since all stallions used in this study were semen donors and were housed at the Equine Reproduction Service, the local ethics committee at our University indicated that no further ethics authorization was required.
Semen samples were collected using a Hannover-type artificial vagina (Minitüb GmbH, Tiefenbach, Germany) with an in-line nylon mesh filter to separate the gel fraction. Gel-free semen ere subsequently diluted 1:5 (v:v) in a Kenney extender [29 ], previously warmed at 37 °C. Sperm concentration was assessed with a Neubauer chamber (Paul Marienfeld GmbH & Co. KG, Lauda-Köningshofen, Germany), and each sample was split into two different fractions. The first one was used to assess the quality of the fresh semen, whereas the other was divided into nine different sub-fractions that were cryopreserved in the presence or absence of different concentrations of the three AQP-inhibitors.
+ Open protocol
+ Expand
2

Quantifying Viable Cells After Reperfusion

Check if the same lab product or an alternative is used in the 5 most similar protocols
CFs were plated at a density of 156 cells/mm2 on 35-mm plastic dishes and stimulated under the conditions indicated for each experiment. After 16 h of simulated reperfusion, cells were washed two times with PBS and treated with trypsin EDTA (0.5%) and EDTA 0.2% (1×) to detach cells, followed by administration of FBS (10%) to induce inactivation. After detachment, aliquots of 20 μl of sample plus 20 μl of trypan blue (0.5%) reagent were homogenized, and then 8 μl was transferred to a Neubauer chamber (Paul Marienfeld GmbH & Co. KG, Lauda-Königshofen, Germany) to count viable cells (unstained) using optic microscopy. Experiments were performed in duplicate and repeated six times. At least 1,000 cells/ml was counted in each sample.
+ Open protocol
+ Expand
3

NGF and Anti-NGF Antibody Treatment Protocol

Check if the same lab product or an alternative is used in the 5 most similar protocols
For the treatment with 100 ng/mL NGF or 100 ng/mL anti–NGF neutralizing antibody (RnD Systems, Minneapolis, MN, USA), 1.5 mL/well cell suspension of 6.7 × 104 cells/mL were plated in 12-well plates (FalconTM, Durham, NC, USA) in serum-free, albumin containing medium [43 (link)] and cultured for 72 h. After that, the cells were washed with PBS and incubated with 10 µg/mL Mitomycin C (Sigma-Aldrich®, St. Louis, MO, USA) in serum-free albumin-containing medium for 30 min at 37 °C ensuring cell cycle arrest [42 (link)]. Then the cells were washed twice with albumin-containing medium and subsequently treated with albumin-containing medium for two times 48 h supplied with 100 ng/mL recombinant human NGF [45 (link)] or with 100 ng/mL anti NGF neutralizing antibody (RnD Systems) for altogether 96 h. After completion of treatments, the cells were used for cell counting with trypan blue staining (Sigma, Darmstadt, Germany) in a Neubauer chamber (Paul Marienfeld GmbH & Co. KG, Lauda-Königshofen, Germany).
+ Open protocol
+ Expand
4

Microbial Consortium Growth Kinetics

Check if the same lab product or an alternative is used in the 5 most similar protocols
An aliquot of the IC 50 concentration for the microbial consortium was placed under the same conditions as the cell growth experiment for 144 h. The experiments had a maximum solvent content of methanol at 0.5% v/v, as mentioned in Section 2.3. Cell growth was measured spectrophotometrically at 48, 96 and 144 h at 750 nm, and the presence of both strains in the culture was determined by cell count using a Neubauer chamber (Superior Marienfeld, Germany).
+ Open protocol
+ Expand
5

Determining Biomass in Viscous Cultures

Check if the same lab product or an alternative is used in the 5 most similar protocols
The optical density (OD) of the culture samples (2 mL) was determined at a wavelength of 750 nm using a UV/Vis spectrophotometer (Uvmini-1240, Shimadzu corp., Kyoto, Japan) in disposable semi-micro cuvettes (GBO, Frickenhausen, Germany). When the optical density was higher than 0.6, the samples were diluted with sterile media to reach a final OD750nm measurement between 0.2–0.6. Dry weight and ash free dry weight were performed following Van Wychen and Laurens [97 ]. To overcome the inability to centrifuge the cultures due to their high viscosity, 5 mL of culture sample was first freeze dried and then burned in a muffle furnace (M110, Thermo Electron LED GmbH, Langenselbold, Germany). Cells counts were determined manually using a Neubauer chamber (Paul Marienfeld GmbH&Co, KG, Lauda-Königshofen, Germany) and diluted, if necessary.
+ Open protocol
+ Expand
6

Geltrex-Coated Transduction of Glioblastoma Stem Cells

Check if the same lab product or an alternative is used in the 5 most similar protocols
Then, 0.3 mL Geltrex® Ready-To-Use matrix (Gibco) was used for coating the wells of a 24-well plate, which was subsequently incubated for one hour at 37 °C to allow gelling of the matrix. At the time of use, the liquid layer above the Geltrex® coating was aspirated off, and the GSCs were transduced with the viral supernatant pLKO.1-puro-ctrl, or pLKO.1-puro-shRNA18 or pLKO.1-puro-shRNA53, in pre-equilibrated DMEM/F-12 (1:1) (1X) + GlutaMAX (Gibco) and were immediately plated (20,000 cells/well) in triplicate. Cells were detached with 50 µL of Trypsin-EDTA 1X in PBS (EuroClone, Pero, Italy) and 50 µL of DPBS 1 × (Dulbecco’s Phosphate-Buffered Saline, Corning) were added to the detached cells. Then, 50 µL of this cell suspension were mixed with 50 μL of trypan blue stain 0.4% (Gibco) to be counted at the different time points using a Neubauer chamber (Marienfeld). Live cells were counted using a Nikon ECLIPSE TS100 microscope.
+ Open protocol
+ Expand
7

Quantifying Chlorophyll in D. salina Cultures

Check if the same lab product or an alternative is used in the 5 most similar protocols
The population growth of D. salina in cultures was determined by daily cell count with Neubauer chamber (Marienfeld Superior, Colonia, Germany) from the beginning of adaptation stage to the initial stationary stage. According to the equations proposed by (Guillard, 1973 ) cell density, specific growth rate and duplication time were estimated.
The quantification of the production of chlorophyll α and β and total of D. salina according to culture conditions with biomass samples was carried out. Acetone 90% analytical grade was used for the pigments extraction. The assessment of extracts were carried out at absorbance readings of 480, 647 and 664 nm wavelengths in a UV–visible spectrophotometer (Genesys™ 20-Thermo Scientific, Basingstoke, Hampshire UK) against an analytical grade acetone white to 90%. The concentration of chlorophyll a and b was calculated according to the equation of (Jeffrey and Humphrey, 1975 ) and that of carotenoids with the equation suggested by Strickland and Parsons (1972) .
+ Open protocol
+ Expand
8

Isolation and Characterization of Entomopathogenic Fungal Strains

Check if the same lab product or an alternative is used in the 5 most similar protocols
OP-Hir-3, OP-Hir-10, and OP-Hir-12 H. citriformis strains were previously isolated from Diaphorina citri adult cadavers, showing fungal aerial mycelia, in Tabasco, Yucatán, and Colima, México, respectively [20 (link)]. Strains are available in a public strain collection at the National Center for Biological Control, Mexico (Centro Nacional de Referencia de Control Biológico-CNRCB; accessed by 28 August 2023). Strains were kept in 10.0% glycerol and cultured on potato dextrose agar with 1.0% yeast extract (PDAY; Difco Laboratories, Detroit, MI, USA) at 28.0 °C ± 2.0 °C for six weeks to achieve abundant conidiation. Conidia were produced via solid culturing on oats, and their viability was tested as previously reported [20 (link)]. Produced conidia were quantified with a Neubauer chamber (Marienfeld, Germany) and their viability was determined before each experiment. For the bioassays, we only used conidia with at least 90.0% viability.
+ Open protocol
+ Expand
9

Stallion Semen Collection and Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
This study included nine ejaculates from nine different adult stallions, with proven fertility, housed at the Equine Reproduction Service, Autonomous University of Barcelona (Bellaterra, Cerdanyola del Vallès, Spain). This is an EU-approved semen collection center (Authorization code: ES09RS01E) that operates under strict protocols of animal welfare and health control. All animals were semen donors and were collected under the health conditions set by the EU (free of equine arteritis, infectious anemia, and contagious metritis). Since this service already runs under the approval of the Regional Government of Catalonia (Spain) and because no manipulation to animals other than semen collection was carried out, the ethics committee of our institution indicated that no further ethical approval was required.
Ejaculates were collected through a Hannover artificial vagina (Minitüb GmbH, Tiefenbach, Germany) and an in-line nylon mesh filter was used to separate the gel fraction from the semen. Upon collection, gel-free semen was diluted 1:5 (v:v) with Kenney extender [22 ], previously prewarmed to 38 °C. Sperm concentration was determined in all samples through a hemocytometer (Neubauer Chamber, Paul Marienfeld GmbH & Co. KG, Lauda-Königshofen, Germany).
+ Open protocol
+ Expand
10

Equine Semen Cryopreservation Protocol

Check if the same lab product or an alternative is used in the 5 most similar protocols
The collection of the samples was performed at the Equine Reproduction Service of the Universitat Autonoma de Barcelona (Bellaterra, Cerdanyola del Vallès, Spain), which is a European centre approved to produce semen with authorization code ES09RS01E. Stallions used came at the service for commercial semen freezing. Thirteen stallions from 4 to 18 years old of several breeds (Arabian, Andalusian, and Warmblood) were used, with a total of 48 ejaculates kept counting between 1 to 5 ejaculates per stallion.
Semen collection was conducted using a Hannover artificial vagina (Minitüb GmbH, Tiefen-bach, Germany). The ejaculate without gel was diluted 1:5 in Kenney extender in 50 mL corning tubes previously warmed at 37 °C. All ejaculates were evaluated before freezing: total volume was recorded, sperm concentration was evaluated by a haemocytometer (Neubauer chamber, Paul Marienfeld GmbH and Co., KG; Lauda-Königshofen, Germany), motility by a CASA system (Section 2.2), and sperm morphology and viability using eosin-nigrosin staining [30 (link)].
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!