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50 protocols using brilliant blue g

1

Fluorescence Dyes and Reagents for Biological Research

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Octanol, heptanol, carbenoxolone, oleamide, LaCl3, Etd+, procion orange MX2R, brilliant blue G (BBG), Evans blue, propidium iodide, 4-Bromo calcium ionophore A23187 were purchased from Sigma-Aldrich (St. Louis, Missouri, USA). The 9-amino-6-Chloro-2-Methoxyacridine (ACMA), DAPI+2, hexidium iodide, nuclear yellow, BOBO 1-iodide, 7-aminoactinomycin D (7-ADD), YOYO 1-iodide, TOTO 1-iodide and ethidium homodimer–2–bromide obtained from Invitrogen (Massachusetts, USA), indocyanine green from Pulsion medical systems, (Feldkirchen, Germany) methylene blue from Euromed (Santiago, Chile).
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2

LPS, BzATP, BBG, and MgSO4 Protocol

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Lipopolysaccharide from Escherichia coli O55:B5 (LPS, L2880, Sigma), 2’(3 (link))-O-(4-Benzoylbenzoyl) adenosine-5’-triphosphate, triethylammonium salt (BzATP, sc203862, Santa-Cruz), Brilliant Blue G (BBG, B0770, Sigma-Aldrich), MgSO4 (M2643, Sigma) were purchased, stock solutions were prepared for 1 and 10 μl/ml LPS; 10 mM BzATP; 1 mM BBG; 1 M MgSO4; and were kept at −80 °C.
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3

Evaluating Curli Production in E. coli Strains

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Curli production was determined in the strains by Congo Red assay as previously described (Zhou et al., 2013 (link)). Congo Red agar plates was made by preparing yeast extract and Casamino acid agar (YESCA; 1 g L-1 yeast extract, 10 g L-1 casamino acids, 20 g L-1 agar) and after autoclaving, filter sterilized Congo Red (50 μg ml-1 final concentration; Sigma) and filter sterilized Brilliant Blue G (10 μg ml-1 final concentration; Sigma) were added. E. coli strains were grown in LB broth and incubated at 37°C overnight. Five microliters of the overnight culture of each strain was spotted on the center of a thick Congo Red agar plate. The plates were incubated at 28°C for 48 h. Images were captured with Canon CanoScan 9000F MKII Flatbed Scanner at 600 dpi.
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4

Berbamine-based Nanomedicine Formulation

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Berbamine (BBM), Mitomycin C, Pluronic F-127, poly (ethylene glycol)-10,000 (PEG – 10,000), Rhodamine 123, Tween-80, propidium iodide (PI), 6-coumarin, protease inhibitor cocktail, sodium dodecyl sulphate (SDS), glycine, 3-(4, 5-dimethylthiazol-2-yl)-2, 5-diphenyl tetrazolium bromide (MTT), D-α-Tocopherol poly (ethylene glycol) 1000 succinate (TPGS), bradford reagent, triethyl amine (TEA), crystal violet, gelatin, brilliant blue G, p-coumaric acid and luminol were procured from Sigma-Aldrich (St. Louis, MO). Glycerylmonooleate (GMO) was purchased from Eastman (Memphis, TN). Sodium chloride was procured from MP biomedical (Cedex, France). Acetonitrile and methanol were obtained from Spectrochem, Pvt. Ltd. (Mumbai, India). Dimethyl sulphoxide, ammonium acetate and acetic acid were obtained from Merck, India Pvt. Ltd. (Mumbai, India). Tris base was purchased from Promega (Promega Corporation, Madison, Wisconsin). All other chemicals used were purchased from Sigma-Aldrich (St. Louis, MO) and used without further purification.
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5

Pharmacological inhibition of purinergic signaling

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EpiLife culture medium with Ca2+ (60 μM), EpiLife defined growth supplement (EDGS), penicillin/streptomycin, and Lipofectamine 2000 reagent were purchased from Thermo Fisher Scientific (Waltham, MA USA). On-target plus siRNA was purchased from GE healthcare (Little Chalfont, UK). FNC coating mixture was purchased from Athena ES (Baltimore, MA, USA). Suramin hexasodium salt (an inhibitor of P2X and P2Y receptors), PPADS tetrasodium salt (an inhibitor of P2X and P2Y receptors), TNP-ATP triethylammonium salt (an inhibitor of P2X receptor), NF 157 (an inhibitor of P2Y11 and P2X1), ARL 67156 (an inhibitor of ecto-ATPases), and 10Panx (an inhibitor of Pannexin-1 channel) were purchased from Tocris Bioscience (Minneapolis, MN, USA). Adenosine-5’-(γ-thio)-triphosphate tetralithium salt (ATPγS, a non-hydrolyzable ATP analogue), Brilliant blue G (BBG; an inhibitor of P2X receptors), and apyrase were purchased from Sigma-Aldrich (St. Louis, MO, USA).
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6

Inflammatory Response Quantification

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ATP, oxidized ATP, Brilliant Blue G (BBG), PI, LY, Triton X‐100, HEPES, NaCl, KCl, MgCl2, CaCl2, phosphate‐buffered saline, modified Griess reagent, Lipopolysaccharide (LPS) from Escherichia coli, dihydroethidium (DHE), and RPMI 1640 were purchased from Sigma Chemical Co. (St. Louis, MO, USA). Fetal bovine serum was obtained from Gibco (Massachusetts, MA,USA). The ELISA Kit for detection of human and murine IL‐1β was purchased from R&D Systems (Minneapolis, MN, USA). A kit for the detection of lactate dehydrogenase (LDH) was purchased from Doles (Goiania, GO, Brazil).
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7

Protein Quantification via Bradford Assay

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Protein content was measured using the Bradford method [51 (link)]. The procedure is based on formation of a complex between dye (brilliant Blue G, Sigma-Aldrich, Dorset, UK) and the protein present in the sample, and absorbance is read at 595 nm using a spectrophotometer. 50 µL filtered crude enzyme extract was added to 1.5 mL of concentrated dye reagent, vortexed and allowed to stand for 20 min before taking the absorbance reading. Bovine serum albumin (BSA) (Sigma-Aldrich, Dorset, UK) was used to construct a standard curve, and the protein concentration of sample was calculated from the standard curve obtained. Protein content was used to calculate the specific activity of myrosinase enzymes (U/mg protein).
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8

Assay Protocol for Enzymatic Activity

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All chemicals used in this study were of the highest purity >99.9% and quality. Indomethacin, ibuprofen, KCl, Na2SeO3, latex beads, carboxylate-modified polystyrene, fluorescent red, bovine serum albumin, brilliant blue G, p-nitrophenyl butyrate, 2-nitrophenyl-B-D-galactopyranoside, 1-chloro-2,4-dinitrobenzene, L-glutathione reduced, sodium phosphate dibasic were purchased from Sigma-Aldrich. CaCl2·2H2O, MgSO4·7H2O, NaHCO3, HCl, p-nitrophenyl phosphate, boric acid, ammonium acetate, NaOH, methanol, and DMSO were purchased from Fisher Scientific.
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9

Antagonists of P2 Purinergic Receptors

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P2 receptor antagonists: Pyridoxal phosphate-6-azo (benzene-2,4-disulfonic acid) tetrasodium salt hydrate (PPADS), MRS2211, MRS2179, MRS2159, A438079, Brilliant Blue G, ATP-2′, 3′-dialdehyde (OxATP), niflumix acid, carbenoxolone disodium salt, and apyrase were purchased from Sigma-Aldrich (St. Louis, MO, United States). NF449, NF023, and Evans Blue tetrasodium salt were purchased from Tocris Bioscience (Abingdon, United Kingdom). Suramin hexasodium salt was purchased from Aladdin (Shanghai, China). Anti-His monoclonal antibody was purchased from EARTHOX Life Sciences (Millbrae, CA, United States). Anti-ETX monoclonal antibody was developed previously by colleagues in our laboratory. HRP-coupled goat anti-mouse IgG antibody was purchased from TransGen Biotech (Beijing, China). The ATP assay kit was purchased from Calbiochem-Merck (Darmstadt, Germany). MTS (3-(4, 5-dimethylthiazol-2-yl) -5(3-carboxymethoxyphenyl) -2-(4-sulfopheny)-2H-tetrazolium, inner salt) was purchased from Promega Corporation (Madison, WI, United States).
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10

Uric Acid and Inflammatory Pathways

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Uric acid, lipopolysaccharide (LPS; from Escherichia coli 0111:B4), Brilliant Blue G, pyrrolidinedithiocarbamate (PTDC), and HEPES were purchased from Sigma-Aldrich (St. Louis, MO, USA). Wortmannin was purchased from MedChemExpress (Monmouth Junction, NJ, USA). Acetyl-YVAD-chloromethylketone and TAK242 were purchased from Calbiochem (Rockland, MA, USA). Pam3CSK4 was purchased from Tocris (Bristol, UK). Antibodies against phosphorylated-Akt (p-Akt), Akt, caspase-1 P10, and caspase-1 P20 were obtained from Cell Signaling Technology (Beverly, MA, USA). Antibodies against ABCG2, PDZK1, Na/K ATPase, Lamin A/C, GAPDH, β-actin, TLR2, TLR4, MYD88, P2X7, ASC, and nuclear factor-κB (NF-κB) were obtained from Santa Cruz Biotechnology (Santa Cruz, CA, USA). Penicillin/streptomycin and TRIzol reagent were purchased from Invitrogen Life Technologies (Carlsbad, CA, USA).
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