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5 protocols using alcian blue ph 2.5 stain kit

1

Extraction and Quantification of Murine Immune Factors

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Histopaque-1077 and −1119, RPMI 1640, Luria-Bertani (LB) broth, bovine serum albumin (BSA), paraformaldehyde, nalidixic acid and kanamycin were procured from Sigma (St. Louis, MO). DNase I (dornase alfa, Pulmozyme®) was kindly gifted from Genentech. Duoset enzyme-linked immunosorbent assay (ELISA) kits for mouse Lipocalin2 (Lcn2), keratinocyte-derived chemokine (KC), serum amyloid A (SAA), neutrophil elastase (NE), myeloperoxidase (MPO), interleukin (IL)-22 and IL-17A were obtained from R&D Systems (Minneapolis, MN). SYBR Green mix and the qScript complementary DNA (cDNA) synthesis kit were procured from Quanta BioSciences (Gaithersburg, MD). Ly6G antibody was purchased from Abcam (Cambridge, MA). All other fine chemicals used in the present study were reagent grade and procured from Sigma. Alcian Blue (pH 2.5) Stain Kit was obtained from Vector Laboratories (Burlingame, CA). Mouse Lamina Propria Dissociation Kit was purchased from Miltenyi Biotec (Auburn, CA). Cl-amidine (hydrochloride) was obtained from Cayman chemicals (Ann Arbor, MI).
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2

Extraction and Quantification of Murine Immune Factors

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Histopaque-1077 and −1119, RPMI 1640, Luria-Bertani (LB) broth, bovine serum albumin (BSA), paraformaldehyde, nalidixic acid and kanamycin were procured from Sigma (St. Louis, MO). DNase I (dornase alfa, Pulmozyme®) was kindly gifted from Genentech. Duoset enzyme-linked immunosorbent assay (ELISA) kits for mouse Lipocalin2 (Lcn2), keratinocyte-derived chemokine (KC), serum amyloid A (SAA), neutrophil elastase (NE), myeloperoxidase (MPO), interleukin (IL)-22 and IL-17A were obtained from R&D Systems (Minneapolis, MN). SYBR Green mix and the qScript complementary DNA (cDNA) synthesis kit were procured from Quanta BioSciences (Gaithersburg, MD). Ly6G antibody was purchased from Abcam (Cambridge, MA). All other fine chemicals used in the present study were reagent grade and procured from Sigma. Alcian Blue (pH 2.5) Stain Kit was obtained from Vector Laboratories (Burlingame, CA). Mouse Lamina Propria Dissociation Kit was purchased from Miltenyi Biotec (Auburn, CA). Cl-amidine (hydrochloride) was obtained from Cayman chemicals (Ann Arbor, MI).
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3

Multimodal Histological Analysis of Tissue Samples

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H&E staining, immunohistochemistry, and alcian blue staining were performed from paraffin-embedded tissue samples; 1–2 µm slides were cut by microtome (Leica). All antibodies for immunohistochemical staining were used in 1:50, 1:100, or 1:200 dilution, and incubated overnight at 4 °C. Primary antibodies: DNA polymerase theta (Abcam ab111218, Cambridge, UK), PARP1 (Abcam ab32138, Cambridge, UK), Mre11 (Cell Signaling 4895, Danvers, MA, USA), Ku70 (Santa Cruz Biotechnology sc-1486, Heidelberg, Germany), Ki67 (Bethyl Laboratories IHC-00375, Montgomery, TX, USA), PCNA (Cell Signaling 2586, Danvers, MA, USA), CyclinD1 (Cell Signaling 2978, Danvers, MA, USA), p-ERK1 (Cell Signaling 4370, Danvers, MA, USA), Cox2 (Cell Signaling 12282, Danvers, MA, USA). Alcian blue was performed by Alcian Blue pH 2.5 Stain Kit (Vector Laboratories H-3501, Newark, CA, USA), according to the manufacturer’s protocol. All slides used for histological analysis were scanned with the Pannoramic Midi II (3DHISTECH, Budapest, Hungary), and evaluated with different magnification using Quant Center software (3DHISTECH, Budapest, Hungary).
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Histological Analysis of Murine Colonic Tissue

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Swiss rolls of colons were fixed in 10% buffered formalin (Fisher Scientific) overnight and then stored in 70% ethanol. Paraffin embedding tissue sections (5 microns) were stained with hematoxylin & eosin (H&E) using standard protocols at the Animal Diagnostics Laboratories, Pennsylvania State University. To detect the presence of acidic mucin in the goblet cells, alcian blue staining (pH 2.5) was performed in 5 μm section of a Swiss roll made from the colon using Alcian blue (pH 2.5) stain kit from Vector laboratories, USA. Histological scoring for colonic inflammation was graded as described previously30 (link), 31 (link) based on intestinal lesions, inflammation, mucosa, and percentage of affected area.
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5

Histological Analysis of Murine Pancreata

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Mice pancreata were fixed overnight at 4°C in 10% neutral-buffered formalin, embedded in paraffin, sectioned at a thickness of 3 μm with a Leica RM2245 microtome, and stained with H&E (Sigma). For immunostaining, sections were deparaffinized, rehydrated in a series of ethanol solutions of decreasing concentrations, and subjected to antigen retrieval in sodium citrate buffer (10 mM tri-sodium citrate dehydrate, 0.05% Tween 20, pH 6.0) using a microwave for 15 min. For IHC staining, endogenous peroxidase was inactivated by incubation of sections with 3% H2O2 for 10 min. Epitope blocking was performed by incubation of slides with either 10% donkey-serum diluted in PBS containing 0.2% Tween 20 (PBS-T) or 5% bovine albumin serum (BSA) diluted in 0.3% PBS-T for 1h at room temperature. Primary antibodies were incubated overnight at 4°C, followed by secondary antibody incubation for 1 h at room temperature. IHC signals were detected with a DAB peroxidase substrate kit (Vector Laboratories), and images were acquired with a Leica DMLB microscope. Immunofluorescence images were acquired with a Zeiss (LSM 800 or LSM 880) confocal microscope. Nuclei were stained with DAPI (Sigma). Slides were mounted using ProLong Gold anti-fade reagent (Invitrogen). Alcian blue staining was performed using the Alcian blue (pH 2.5) Stain Kit (Vector Laboratories).
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