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4 protocols using rabbit anti active caspase 3

1

Tissue Processing for Protein and Histology

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Every tumor was cut in half with a scalpel blade; half was taken for protein analysis and half for immunohistochemistry and histology. For protein analysis, tumors were homogenized by a polytron homogenizer in lysis buffer, immunoblot and immunopercipitations were done as described above. For immunostaining tumors were post-fixed for 3 hours in cold 4% PFA followed by 20% sucrose in PBS overnight at 40C. Cryostat sections (20 μm) were cut and stained using standard immunohistochemistry as described above. Primary antibodies: rabbit anti-Ki67 (1:300, Thermo Scientific), rabbit anti-active caspase 3 (1:1000, R&D Systems). Standard protocol was used for H&E staining.
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2

Immunohistochemical Labeling of Neuronal Markers

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The following mouse monoclonal primary antibodies were purchased from the UC Davis/NIH NeuroMab facility: AnkG (106/36; RRID:AB_10673030), AnkG (106/65; RRID:AB_10675130), PanNav (N419/78; RRID:AB_2493099), β1 spectrin (N385/21; RRID:AB_2315815), Parvalbumin (L114/3; RRID:AB_2651167), AnkR (N388A/10, RRID:AB_2491109). Other antibodies were sourced as follows: mouse anti-PanNav (Sigma-Aldrich K58/35; RRID:AB_477552), chicken anti-MAP2 (Encor cat. CPCA-MAP2; RRID:AB_2138173), rat anti-GFP (Biolegend cat. 338002; RRID:AB_1279414), chicken anti-Pan-Neurofascin (R and D Systems cat. AF3235; RRID:AB_10890736), rabbit anti-βAPP (Thermo Fisher Scientific, RRID:AB_2533902), rabbit anti-Parvalbumin (Novus, RRID:AB_791498), rabbit anti-active Caspase3 (R and D Systems, RRID:AB_2243952). The following antibodies were described previously: rabbit anti-βIV Spectrin SD antibodies (Yoshimura et al., 2016 (link)); rabbit anti-AnkR (Ho et al., 2014 (link)); rabbit anti-Caspr (RRID:AB_2572297; Rasband et al., 1999 (link)). Secondary antibodies were purchased from Thermo Fisher Scientific and Jackson ImmunoResearch Laboratories.
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3

Immunocytochemistry Protocol for Cell Imaging

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Immunocytochemistry was performed as follows: fixation with 4% paraformaldehyde (PFA) for 20 min in RT; washing with phosphate buffered saline (PBS) twice; permeabilization and blocking in PBS containing 0.1% Triton X-100 and 3% FBS in PBS for 30 min at RT; incubation with primary antibody diluted 1:500 in blocking solution for 2 h in RT; washing with PBS three times; incubation with Hoechst 33258 (Nacalai Tesque) and secondary antibody diluted 1:500 in PBS for 1 h in the dark at RT; washing with PBS three times. Imaging was performed using a Leica AF6000 microscope. As primary antibodies, chicken anti-GFP (AVES Labs), mouse anti-Ki67 (BD Biosciences) and rabbit anti-active Caspase 3 (R&D Systems) were used. As secondary antibodies, the following were used: CF647-conjugated anti-mouse IgG (Biotium) and CF647-conjugated anti-rabbit IgG (Biotium), FITC-conjugated anti-chick IgY (Biotium). For the EdU assay, cells were cultured with 10 μM EdU in Click-iT EdU Imaging Kits (Life Technologies) for 4 h, fixed with 4% PFA, permeabilized with 0.1% Triton-X and 3% FBS in PBS, and stained with Click-iT reaction buffer for 30 min at RT in the dark. After washing with PBS, primary and secondary staining were performed in the dark.
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4

Immunohistochemical Profiling of Gastric Pathways

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Immunohistochemistry was performed on formalin-fixed paraffin-embedded antral and corpus sections. Antibodies used were rabbit anti-bak (Millipore, Hampshire, UK), rabbit antiactive caspase-3 (R & D Systems, Oxfordshire, UK), rabbit antichromogranin A (Abcam, Cambridge, UK), rabbit anti-H+-K+-ATPase (Calbiochem, Nottingham, UK), and rat anti-Ki-67 (Dako, Ely, UK). Immunostaining for bak, active caspase-3, chromogranin A, and Ki-67 was performed as previously described (9 (link), 21 (link)). Briefly, antigen retrieval was performed by heat retrieval in 10 mmol/l tricarboxylic acid buffer (pH 6), and the primary antibody was applied at 1:600 for bak, 1:750 for active caspase-3, 1:1,000 for chromogranin A, and 1:20 for Ki-67 overnight at 4°C. A goat antirabbit or rabbit antirat biotinylated secondary antibody (Dako) was used at a dilution of 1:200, and an ABC (Vector Laboratories, Peterborough, UK) amplification step was performed before detection by 3-3′-diaminobenzidine tetrahydrochloride. Immunohistochemistry for H+-K+-ATPase did not require heat-mediated antigen retrieval, instead, sections were incubated with 1% Triton X-100 for 30 min before the addition of primary antibody at 1:1,000.
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