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11 protocols using ficoll histopaque 1077 1

1

Isolation of Human Immune Cells

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Example 8

Cell isolations: Human polymorphonuclear neutrophils (PMNs) were isolated from peripheral blood as in (15). In brief, whole blood was collected from healthy volunteers according to Partners Human Research Committee Protocol (1999P001297). Red blood cells were lysed with hypotonic buffer. PMNs were isolated using Ficoll-Histopaque 1077-1 (Sigma-Aldrich, St. Louis, Mo., USA) density gradient and resuspended in Dulbecco's PBS.

Human macrophages were obtained from peripheral blood mononuclear cells isolated from leukopacks, procured from Children's Hospital Blood Bank (Boston, Mass., USA). Monocytes were cultured for 7 d in RPMI 1640 medium (Life Technologies, Carlsbad, Calif., USA) supplemented with 10% fetal bovine serum (Invitrogen, Grand island, N.Y., USA), 2 mM L-glutamine (Lonza, Basel, Switzerland) penicillin-streptomycin (Lonza), and granulocyte macrophage-stimulating factor (10 ng/ml; R&D Systems, Minneapolis, Minn., USA) (15).

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2

Purification of Human Neutrophils

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Peripheral blood human PMN were purified using density-based Ficoll-Histopaque 1077-1 (Sigma) as previously described.(9 (link)). PMN were isolated from human whole blood from healthy human volunteers giving informed consent under protocol # 1999-P- 001297 approved by the Partners Human Research Committee. Red blood cells were lysed by hypotonic lysis.
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3

Isolation and Polarization of M1/M2 Macrophages

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Leukocyte concentrates from freshly withdrawn peripheral blood of healthy adult human donors were provided by the Institute of Transfusion Medicine, University Hospital Jena, Germany. The experimental protocol was approved by the ethical committee of the University Hospital Jena. All methods were performed in accordance with the relevant guidelines and regulations. Peripheral blood mononuclear cells (PBMC) were isolated using dextran sedimentation and Ficoll-Histopaque 1077-1 (Sigma-Aldrich, Taufkirchen, Germany) centrifugation. For differentiation and polarization towards M1 and M2, published criteria (12 (link)) were used. Thus, M1 were generated by incubating monocytes with 20 ng/ml GM-CSF (Peprotech, Hamburg, Germany) for 6 days in RPMI 1640 supplemented with 10% fetal calf serum, 2 mmol/L l-glutamine (Biochrom/Merck, Berlin, Germany), and penicillin-streptomycin (Biochrom/Merck), followed by 100 ng/ml LPS (Sigma-Aldrich) and 20 ng/ml INF-γ (Peprotech) treatment for another 48 h. M2 were incubated with 20 ng/ml M-CSF (Peprotech) for 6 days of differentiation plus 20 ng/ml IL-4 (Peprotech) for additional 48 h of polarization.
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4

Monocyte-Derived Macrophage Polarization

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Leukocyte concentrates from freshly withdrawn peripheral blood of healthy adult human donors were provided by the Institute of Transfusion Medicine (University Hospital Jena, Germany). The experimental protocol was approved by the ethical committee of the University Hospital Jena. All methods were performed in accordance with the relevant guidelines and regulations. PBMC were isolated using dextran sedimentation and Ficoll-Histopaque 1077-1 (Sigma-Aldrich, Taufkirchen, Germany) centrifugation. PBMC were seeded in PBS containing 1 mM Ca2+ and 0.5 mM Mg2+ in cell culture flasks (Greiner Bio-one, Frickenhausen, Germany) for 1.5 h at 37 °C and 5% CO2 for adherence of monocytes. For differentiation and polarization of monocytes towards M1- and M2-MDM, published criteria [27 (link)] were used. Thus, M1-MDM were generated by incubating monocytes with 20 ng/mL GM-CSF (Peprotech, Hamburg, Germany) for 6 days in RPMI 1640 supplemented with 10% fetal calf serum, 2 mmol/L L-glutamine (Biochrom/Merck, Berlin, Germany), and penicillin-streptomycin (Biochrom/Merck), followed by 100 ng/mL LPS (Sigma-Aldrich) and 20 ng/mL IFN-γ (Peprotech) treatment for another 48 h. M2-MDM were obtained after differentiation of monocytes with 20 ng/mL M-CSF (Peprotech) for 6 days, and then with 20 ng/mL IL-4 (Peprotech) for additional 48 h of polarization.
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5

Isolation and Characterization of Immune Cells

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Materials include the following: Zymosan A (from Saccharomyces cerevisiae), bovine serum albumin (BSA), Roswell Park Memorial Institute Media 1640 (RPMI 1640), PBS (with and without calcium and magnesium), Ficoll-Histopaque 1077-1 and FITC goat anti-mouse IgG (Sigma-Aldrich); fetal bovine serum (Life Technologies). Rat anti-mouse Ly6G-PE and FITC, CD16/CD32 purified (Mouse BD Fc Block) and mouse anti-human CD163-PE (BD Bioscience); F4/80-PE and FITC, PerCP-Cy5.5 CD11b (eBioscience); mouse recombinant granulocyte macrophage colony-simulating factor (GM-CSF), mouse anti-human CD206-APC, HLA-DR-FITC, CD3-FITC and CD19-PE and (Biolegend); 15-LOX-1 (Origene); mouse anti-human ChemR23-PE, human recombinant GM-CSF and hrTNF-α (R&D Systems); human monocyte isolation kits (StemCell Technologies); liquid chromatography (LC)-grade solvents (Fisher Scientific); Eclipse Plus C18 column (Agilent); C18 SPE columns (Waters); EPA (Aldrich); DHA (NuCheck); AT-RvD1 and synthetic and deuterium labeled LM standards (Cayman Chemical).
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6

Genetic Profiling of Myelodysplastic Syndrome

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BM samples from unselected subjects with MDS were obtained from Blood Diseases Hospital at diagnosis or referral and gave informed consent compliant with the Declaration of Helsinki. Written informed consent was obtained in all cases according to the Institutional Review Board. BM mononuclear cells (BM MNCs) were isolated from BM aspirates of MDS patients and healthy donors using a Ficoll-Histopaque 1077–1 (Sigma-Aldrich) density gradient centrifugation. Genomic DNA was extracted using the AxyPrep blood genomic DNA miniprep kit (Axygen Biosciences). Mutation sequencing PCR primers were designed to amplify the coding sequences and splice sites of DNMT3A, SF3B1, U2AF1 and SRSF2. All products were confirmed by 2% agarose gel, purified using QIAquick Spin Kit (Qiagen) and sequenced using ABI PRISM 3730xl DNA Analyzer (Applied Biosystems). The sequence data files were analyzed using the Mutation surveyor3.25 software.
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7

Multiparametric Immune Cell Analysis

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Fetal bovine serum (FBS), RPMI 1640 culture medium, phosphate-buffered saline (PBS), and antibiotic solution (penicillin/streptomycin) were purchased from GIBCO (Gibco BRL Laboratories, Grand Island, NY, USA). Ficoll-Histopaque 1077-1, phorbol 12-myristate 13-acetate (PMA), and brefeldin-A (BFA) were purchased from SIGMA (St. Louis, MO, USA), Ionomycin from ENZO Life Sciences (USA), 7-AAD viability staining solution and reagents for cell staining, fixation and permeabilization as well all monoclonal antibodies used for flow cytometric analysis such as: anti-CD19-fluorescein isothiocyanate (FITC), anti-GM-CSF-phycoerythrin (PE), anti-CD3-FITC, anti-CD27-allophycocyanin (APC), anti-CD38-PE/Cy5 and appropriate isotype controls mouse IgG1-FITC, Rat IgG2α-PE, mouse IgG1-APC, and mouse IgG1-PE/Cy5 were obtained from Biolegend (CA, USA). Finally, the 96 rounded bottom well plates were purchased from Costar (Cambridge, MA, USA).
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8

Isolation and Polarization of Human Macrophages

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Human monocytes were isolated from de-identified leukopacks obtained from Children’s Hospital Blood Bank (Boston, MA) or the Institute of Transfusion Medicine, University Hospital Jena, Germany, with the use of Ficoll-Histopaque 1077-1 (Sigma-Aldrich, St. Louis, MO). Blood was obtained from healthy human volunteers giving informed consent under protocol #1999-P-001297 approved by the Partners Human Research Committee. The protocols for experiments with macrophages were approved by the ethical commission of the Friedrich-Schiller-University Jena. All methods were performed in accordance with the relevant guidelines and regulations. For differentiation and polarization towards M1 and M2, published criteria were used9 (link). Briefly, M1 was produced by incubating isolated monocytes with GM-CSF (20 ng/ml) for 6 days in RMPI 1640 (Life Technologies, Carlsbad, CA) supplemented with 10% fetal bovine serum (Invitrogen, Grand Island, NY), 2 mmol/l l-glutamine (Lonza, Basel, Switzerland), and penicillin–streptomycin (Lonza), followed by LPS (100 ng/ml) plus INF-γ (20 ng/ml) treatment for the indicated times (routinely 48 h). M2 was obtained by incubating monocytes with 20 ng/ml M-CSF for 6 days followed by polarization with 20 ng/ml IL-4 for the indicated times (routinely 48 h).
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9

Isolation and Polarization of Human Macrophages

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Human monocytes were isolated from de-identified leukopacks obtained from Children’s Hospital Blood Bank (Boston, MA) or the Institute of Transfusion Medicine, University Hospital Jena, Germany, with the use of Ficoll-Histopaque 1077-1 (Sigma-Aldrich, St. Louis, MO). Blood was obtained from healthy human volunteers giving informed consent under protocol #1999-P-001297 approved by the Partners Human Research Committee. The protocols for experiments with macrophages were approved by the ethical commission of the Friedrich-Schiller-University Jena. All methods were performed in accordance with the relevant guidelines and regulations. For differentiation and polarization towards M1 and M2, published criteria were used9 (link). Briefly, M1 was produced by incubating isolated monocytes with GM-CSF (20 ng/ml) for 6 days in RMPI 1640 (Life Technologies, Carlsbad, CA) supplemented with 10% fetal bovine serum (Invitrogen, Grand Island, NY), 2 mmol/l l-glutamine (Lonza, Basel, Switzerland), and penicillin–streptomycin (Lonza), followed by LPS (100 ng/ml) plus INF-γ (20 ng/ml) treatment for the indicated times (routinely 48 h). M2 was obtained by incubating monocytes with 20 ng/ml M-CSF for 6 days followed by polarization with 20 ng/ml IL-4 for the indicated times (routinely 48 h).
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10

Isolation of Neutrophils and Monocytes

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Leucocyte concentrates from freshly withdrawn peripheral blood of adult healthy donors were provided by the Institute of Transfusion Medicine of the University Hospital Jena, Germany. The experimental protocol was approved by the ethical committee of the University Hospital Jena. All methods were performed in accordance with the relevant guidelines and regulations. Neutrophils and monocytes were immediately isolated as described before [39 (link)]. In brief, cells were isolated by dextran sedimentation and Ficoll-Histopaque 1077-1 (Sigma-Aldrich) density centrifugation. To purify neutrophils, the remaining erythrocytes were removed by hypotonic lysis. Neutrophils were finally resuspended in PBS pH 7.4 plus 1 mg/mL glucose at the cell density of 5 × 106 cells /mL. Monocytes were separated from peripheral blood mononuclear cells by adherence to cell culture flasks (Greiner Bio-one, Frickenhausen, Germany) for 1 h (37 °C, 5% CO2), followed by cell scraping and resuspension in RPMI 1640 supplemented with 5% fetal calf serum, 2 mmol/L L-glutamine (Biochrom/Merck, Berlin, Germany), and 100 U/mL penicillin; 100 µg/mL streptomycin (Biochrom/Merck).
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