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12 protocols using db 1 capillary column

1

Characterization of Ambergris Volatiles using GC-MS

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E. coli JM109 (Takara, Shiga, Japan) was used for sequencing analysis, and E. coli BL21(DE3) (Takara), pColdTF (Takara), and pColdI (Takara) were used to express BmeTCX genes. NMR spectra were recorded using a Bruker DPX 400 spectrometer (Billerica, MA, USA) at 400 MHz for protons (1H) and 100 MHz for carbon (13C). GC–MS was performed on a JMS-T100GCV spectrometer (JEOL, Tokyo, Japan) equipped with a DB-1 capillary column (30 m × 0.25 mm × 0.25 µm; J&W Scientific. Inc., Folsom, CA, USA), using the EI mode operated at 70 eV. GC analyses were performed using a Shimadzu GC-2014 chromatograph equipped with a flame ionization detector and using a DB-1 capillary column (30 m × 0.25 mm × 0.25 µm; J&W Scientific, Inc.). GC and GC–MS conditions for the BmeTCX products were as follows: injection temperature = 300 °C, column temperature = 220–300 °C (1 °C min−1). GC and GC–MS conditions for the volatile compounds were as follows: injection temperature = 200 °C, column temperature = 40–300 °C (5 °C min−1) for GC and 30–300 °C (5 °C min-1) for GC–MS. Compound 6 was purchased from Wako Pure Chemical Industries, Ltd. (Osaka, Japan). Two ambergris samples (NSMT M55020 and NSMT M55019; Supplementary Fig. 7) stored in the National Museum of Nature and Science (Japan) for more than 30 years were used for the analysis of volatile components.
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2

Dendrobine Content Analysis in Plant Stems

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The stems collected after incubation for 0 d, 7 d, 14 d, 21 d and 28 d were collected for determination of dendrobine content. After the stems of each treatment were dried at 55 °C, they were thoroughly mixed with a pestle and mortar and ground into a fine powder. The dendrobine standard and internal standard naphthalene used in the experiment were purchased from Sinopharm Chemical Reagent Co., Ltd. and China Food and Drug Control Institute respectively. The GC analysis samples were prepared in accordance with the Chinese Pharmacopoeia (2020). Chromatography was performed on an Agilent 6890 GC-FID, using an Agilent DB-1 capillary column (0.25 μm × 0.25 mm × 30 m) and nitrogen as the carrier gas.
The experimental sample was repeated at least three times. The samples were analyzed in random order. Each injection of 1 µL for analysis. The parameters and methods of gas chromatography analysis refer to the Chinese Pharmacopoeia (2020). The flame ionization detection was used to extract the components of the total ion chromatogram. The relative correction factor of naphthalene and dendrobine was obtained (f = 0.002734). The linear regression equation y = 0.1176x + 0.0907 (R2 = 0.9991) proved that the concentration of dendrobine was linear, and the peak area is in the range of 4.6−23.0 mg·L−1.
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3

GC-MS Analysis of Phytochemical Profiles

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The GC–MS analyses of ASH extracts were performed using a Shimadzu QP2010 SE gas chromatography-mass spectrometer (Shimadzu, Kyoto, Japan) equipped with a DB-1 capillary column (25 m in length × 0.32 mm in diameter × 0.52 µm in thickness) (Agilent, USA). Helium was used as the carrier gas at a constant flow rate of 0.5 mL/min. For GC–MS spectral detection, an electron ionization energy method was adopted with a high ionization energy of 70 eV. The injector temperature was set to 250 °C. The temperature of the column was set at 40 °C for 4 min and increased by 10 °C per minute up to 240 °C. Based on a comparison of the retention time (min), peak area, peak height, and mass spectrum of the phytochemicals present in the test samples and the mass spectral library database, we identified the phytochemical contents of the test samples.
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4

GC-FID Analysis of Dendrobine

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Dendrobine
standard and the internal standard naphthalene were purchased from
Sinopharm Chemical Reagent Co., Ltd. (Beijing, China) and Beijing
Bei Na Chuang Lian Biotechnology Institute (Beijing, China), respectively.
The sample preparation for the GC analysis was performed according
to the Pharmacopoeia of China (2015). Chromatography was performed
on an Agilent 6890 GC-FID (California, USA) with a DB-1 capillary
column (0.25 μm × 0.25 mm × 30 m, California, USA)
and nitrogen as the carrier gas.
Three replications were carried
out to ensure the reliability of the experimental results. One microliter
of the derivatized sample was injected, and components of the total
ion chromatogram were extracted by flame ionization detection. The
linear regression equation y = 0.1861x – 0.1474 (r = 0.9995) implied that the dendrobine
concentration was linear, with a peak area in the range of 1.1–11
mg/L.
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5

GC-MS Analysis of Organic Compounds

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The GC/MS system consisted of Agilent 7890 GC (Agilent Technologies, CA, USA) equipped with 5975C inert MSD triple-axis detector (Agilent Technologies, CA, USA), autosampler. DB-1 capillary column (50 m × 250 μm, 0.25 μm, Agilent Technologies, CA, USA) was used to separate the compounds. Separation was achieved with the temperature program of Table 1. N2 was used as the carrier gas at a constant flow rate of 0.3 mL/min. Samples were injected at a split ratio of 1:20, and the injection temperature was held at 250°C. The mass spectrometer was operated in scan mode (50–170 m/z) and SIM mode.
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6

Gas Chromatography Analytical Protocol

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Samples were analyzed by gas chromatography (GC, Shimadzu GC-2010 plus, Japan), which was equipped with FID flame ionization detector. The column was DB-1 capillary column (30 m × 0.25 mm × 0.1 μm, Agilent). Nitrogen with a flow rate of 1.22 mL/min was used as carrier gas for the GC analysis. The column was set at 100°C for 0.2 min, first increased to 220°C at a rate of 8°C/min, then increased to 310°C at a rate of 12°C/min and maintained for 3 min, finally increased to 370°C at a rate of 20°C/min and maintained for 5 min. The injector and the detector temperature were set at 370°C. Each assay was validated at least triplicated for mean values, with margin of error lower than 5%.
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7

GC-FID Analysis of Organic Compounds

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GC-FID analysis was performed by using gas chromatography (GC) conjoined with a flame ionization detector (Hewlett Packard, Palo Alto, CA, USA). The DB-1 capillary column (60 m × 0.32 mm × 0.25 μm film thicknesses) with a 100% dimethylpolysiloxane stationary phase (Agilent Technologies, Santa Clara, CA, USA) was used. Subsequently, 1 μL of each sample was injected into the GC flame ionization detector in splitless mode. As the carrier gas, helium was used at 1.8 mL per min with a constant flow rate. The inlet temperature was 280 °C; the oven temperature program started at 100 °C and then ramped up to 320 °C at 4 °C per min before being held at 320 °C for 25 min; the detector temperature was 320 °C.
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8

Toluene Exposure Measurement Protocol

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The time–weight average (TWA) exposure of each worker to toluene was measured by a diffusive sampler with carbon cloth (Toyobo Co., Osaka, Japan). After exposure, the carbon cloth toluene extract was measured by flame ionization detection gas–liquid chromatography technique (Model GC-148; Shimadzu, Tokyo, Japan) using a DB-1 capillary column (30 m × 0.53 mm inner diameter; J&W Scientific, Folsom, CA, USA).
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9

GC-MS Analysis of Theaspirane in C. sordidus

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Coupled gas chromatography–mass spectrometry (GC‐MS) analysis was performed using a Waters Autospec Ultima mass spectrometer (+EI, 70 eV, source temperature 250 °C, m/z 40–500) coupled to an Agilent 6890 GC fitted with a DB‐1 capillary column (J & W Scientific, 50 m × 0.32 mm id × 0.52 µm film thickness) and a cool on‐column injector. The oven temperature was programmed to start at 30 °C for 5 min, then increase at 5 °C min−1 until 250 °C, with a final hold of 10 min. The carrier gas was helium. Tentative identification of the EAG‐active compound for C. sordidus was confirmed by comparison of GC retention time and peak enhancement using an authentic sample of (2R,5S)‐theaspirane.11
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10

Passive Diffusive Sampling of Benzene and Toluene

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Benzene and toluene analysis from passive diffusive samplers was conducted by gas chromatography coupled by mass spectrometry (GC-MS, 6890-5973, Agilent, Santa Clara, CA, USA) with a 70 eV inert electron impact source operating in single ion monitoring (SIM) mode and a liquid auto-injector (Agilent 7638, Cernusco sul Naviglio, Italy), following automatic thermal desorption (TurboMatrix Thermal Desorber, Perkin Elmer, Shelton, UK). We used a DB1 capillary column (60 m, 0.25 mm i.d., 1.0 μm film thickness; J&W Scientific, CPS Analitica, Milan, Italy) for analyte separation. The analysis was conducted with helium as the carrier gas at a constant flow rate of 1 mL/min and injector temperature of 250 °C. The GC oven temperature was as follows: from 40 °C (10 min) to 90 °C at 10 °C/min, hold 3 min; then to 120 °C at 20 °C/min, hold 2 min; and finally to 160 °C at 30 °C/min, hold 2 min. Benzene and toluene retention time was 14.95 and 19.70 min, respectively. Signals were acquired in SIM mode registering the positive ion to charge ratio m/z as follows: 78 benzene and 91 for toluene. The limit of detection (LOD) was 0.05 µg/m3 for both analytes.
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