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5 protocols using mir 146a

1

MicroRNA Expression Profiling and Analysis

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miRNA isolation was performed with a miRNeasy kit (Qiagen, Venlo, Netherlands) according to manufacturer instructions. Stem-loop RT-qPCR miRNA expression profiling of 760 microRNAs was done as previously described [32] (link), [33] (link). Raw expression values were normalized using the global mean normalization strategy [32] (link). Validation of QPCR array results was done by reverse transcription of total RNA containing miRNA and miRNA detection by real-time PCR, using respectively miScript II RT Kit and miScript SYBR Green PCR Kit (Qiagen, Venlo, Netherlands). MicroRNA specific QPCR primer sets against human mir-146a (MS00003535), mir-491-5p (MS00031899), mir-146b-5p (MS00003542), mir-26b-5p (MS00003234), mir-150-5p (MS00003577), mir-330-3p (MS00031738), mir-195 (MS00003703), mir-184(MS00003640), mir-125a-5p (MS00003423) were purchased from Qiagen (Venlo, Netherlands). For microRNA target and pathway prediction, miRWalk software was applied [34] (link). Correlation of mRNA and microRNA transcription profiles of MM1S and MM1R cells either non-treated or treated with Dex, or following mock transfection or transfection with mir-150-5p mimetic was performed with IPA software.
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2

Regulation of synoviocyte function

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The cells were grown in 6-well dishes at a starting density of 1 × 105 cells/well until a confluence of 85% in DMEM supplemented with 10% FBS; then, the media were replaced with DMEM 0.5% FBS for 6 h before transfection. Afterwards, synoviocytes were transfected with specific inhibitors of miR-34a, miR-146a, and miR-181a (Qiagen, Hilden, Germany), at the concentration of 50 nM, or with their relative negative controls siRNA (NC) (Qiagen, Hilden, Germany), at the concentration of 5 nM, in serum-free medium for a period of 24 h. Supernatants were removed and synoviocytes immediately harvested or incubated with visfatin (5 and 10 μg/mL) or resistin (50 and 100 ng/mL) for additional 24 h.
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3

miRNA Expression Analysis in Brain Tissue

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Total RNA from the brain tissue was isolated using miRNeasy Kit (Qiagen, Valencia, CA, USA) and converted to cDNA using miScript II RT kit (Qiagen), as per manufacturer’s instructions. The cDNA samples were amplified for determining different miRNAs expressions in a 96 well format RT2-qPCR array (MIMM-107ZA-2, Mouse Neurologic Development and Disease, Qiagen) using miScript SYBR Green PCR kit (Qiagen). The cDNA samples were also analyzed for individual miRNAs expression (miR-146a, snoRD72 and RNU-6) (Qiagen). The amplification was performed in Stratagene Mx3000p (Agilent Technologies, Santa Clara, CA) and the cycle threshold (CT) values were determined after baseline and threshold adjustments. For the analysis, baseline and threshold adjustments were kept constant for all the experiments and the results were expressed as fold expression. The altered miRNAs (up-regulated or down-regulated) were checked for sequence similarity to PrPc by an online software targetscan provided by Whitehead institute for the targets of miRNAs (http://www.targetscan.org/).
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Quantifying miRNA Expression in Ectocervical Cells

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cDNA was generated from 1 μg of isolated mRNA from ectocervical cells using the miScript II Reverse Transcription kit (miRNA) (Qiagen) for SYBR Green. qPCR was performed on the QuantStudio 7 Flex Real-Time PCR System (Applied Biosystems, Life Technologies) using the miScript SYBR Green PCR kit (Qiagen) according to the manufacturers’ protocol. The ΔΔCT method was used for relative expression quantification using the QuantStudio Real-time PCR software v1.1 (Applied Biosystems, Life Technologies). The endogenous reference gene RNU6B was used for miRNA quantification. All miRNA primer sets were purchased from Qiagen: miR-143 (MS00003514), miR-145 (MS00003528), miR-193b (MS00031549), miR-146a (MS00003535), miR-223 (MS00003871), miR-148b (MS00031458), miR-15a (MS00003178), miR-21(MS00009079), miR-142 (MS00031451), miR-494 (MS00033754), miR-30e (MS00009401), and RNU6B (MS0001400).
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5

Chondrocyte Transfection and Mechanical Stimulation

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Cells were grown and maintained in 6-well dishes at a starting density of 1 × 105 cells/well until they became 85% confluent in DMEM supplemented with 10% FBS, before replacement with 0.5% FBS for 6hr until transfection procedure. Afterwards, chondrocytes were transfected with miR-34a, miR-146a, and miR-181a specific inhibitors (Qiagen, Hilden, Germany), at the concentration of 50 nM, or with the negative controls siRNA (NC) (Qiagen, Hilden, Germany), at the concentration of 5 nM, in serum-free medium for 24~h. Media were removed and the cells were immediately collected or exposed to cycles of low sinusoidal or static continuous HP for a period of 3~h [29 (link),30 (link)].
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