The largest database of trusted experimental protocols

6 protocols using sfx150

1

RNA Sequencing of Adult and Fetal Tissues

Check if the same lab product or an alternative is used in the 5 most similar protocols
Human adult and fetal tissue samples were mechanically homogenized using a hand-held homogenizer (Thermo Fisher Scientific) and lysed in 500 μl RNA lysis buffer (Ambion) by sonication (1 × 2–4 s pulse, Branson SFX150). RNA was isolated from 3 × 30 μm sections of human adult and fetal tissue using the RNAqueous Micro Kit (Ambion), and total RNA samples were DNase-treated (Ambion). Sample yield and integrity was analyzed using a 2100 Bioanalyzer (Agilent Technologies, Santa Clara, CA, USA). RNA sequencing was performed by standard operating procedure by GENEWIZ (https://www.genewiz.com/en) using Illumina HiSeq with a 2 × 150 bp configuration. Quality control of the obtained sequences was performed using FastQC (Wingett and Andrews, 2018 (link)) (http://www.bioinformatics.babraham.ac.uk/projects/fastqc/ Accessed 12/10/2017). The results were further reviewed by MultiQC (Ewels et al., 2016 (link)). Adaptor sequences, low-quality bases from both sides of the read (3 bases or smaller), and reads with a length smaller than 36 bp were discarded by Trimmomatic (Bolger et al., 2014 (link)).
+ Open protocol
+ Expand
2

Synthesis of PEA-Loaded Lipid Nanoparticles

Check if the same lab product or an alternative is used in the 5 most similar protocols
PEA based lipid nanoparticles (PEA-LNPs) were prepared using the melt emulsification technique [20 (link)]. For the standardized formulation, a blend of PEA, stearic acid, and cholesteryl stearate (1:2.6:2 weight ratio) containing Span 85 (30%, w/w) was melted at a temperature of 85 °C, 10 °C above the melting point of the lipid. Then, the aqueous phase (5 mL Milli-Q water) containing 0.3% Pluronic F68 was heated at the same temperature and added to the lipid phase. Emulsification was performed via ultrasounds (SFX150 Branson, Milan, Italy) for 1 min, followed by homogenization using Ultra-Turrax (T-25 basic, Ika Labortechnik, Germany) at 24,000 rpm for 1.5 min and sonication for 1 min. The obtained oil-in-water emulsion was cooled in an ice bath under magnetic stirring for 15 min to facilitate the solidification of LNPs, and then purified by dialysis membrane (MWCO 12–14,000 Da) for 1 h in 300 mL Milli-Q water. After dialysis, the volume of suspension was adjusted to 5 mL and used for further analysis. Conventional LNPs (C-LNPs) were obtained using the same method, only without PEA.
+ Open protocol
+ Expand
3

Nanoparticle Characterization: Size and Charge

Check if the same lab product or an alternative is used in the 5 most similar protocols
Surface charge and particle size analyses of the O-NPs were performed using a Zetasizer Nano ZS (He-Ne laser; Malvern Instruments Ltd., Worcestershire, UK) furnished with a back-scattering detector (173°) at 25 °C. 100 µL (95 µg/mL) of O-NPs were dispersed in 900 µL of water, sonicated for 15 s using a Branson SFX 150 digital sonifier equipped with a Branson 4C15 40 kHz converter (50% intensity) (Process Equipment & Supply, Inc., North Olmsted, OH, USA). Triplicate measurements were performed in a pre-rinsed dip cell in automatic mode.
+ Open protocol
+ Expand
4

RNA Sequencing of Adult and Fetal Tissues

Check if the same lab product or an alternative is used in the 5 most similar protocols
Human adult and fetal tissue samples were mechanically homogenized using a hand-held homogenizer (Thermo Fisher Scientific) and lysed in 500 μl RNA lysis buffer (Ambion) by sonication (1 × 2–4 s pulse, Branson SFX150). RNA was isolated from 3 × 30 μm sections of human adult and fetal tissue using the RNAqueous Micro Kit (Ambion), and total RNA samples were DNase-treated (Ambion). Sample yield and integrity was analyzed using a 2100 Bioanalyzer (Agilent Technologies, Santa Clara, CA, USA). RNA sequencing was performed by standard operating procedure by GENEWIZ (https://www.genewiz.com/en) using Illumina HiSeq with a 2 × 150 bp configuration. Quality control of the obtained sequences was performed using FastQC (Wingett and Andrews, 2018 (link)) (http://www.bioinformatics.babraham.ac.uk/projects/fastqc/ Accessed 12/10/2017). The results were further reviewed by MultiQC (Ewels et al., 2016 (link)). Adaptor sequences, low-quality bases from both sides of the read (3 bases or smaller), and reads with a length smaller than 36 bp were discarded by Trimmomatic (Bolger et al., 2014 (link)).
+ Open protocol
+ Expand
5

Protein Extraction from Brain Tissues

Check if the same lab product or an alternative is used in the 5 most similar protocols
Hippocampus and cortical regions were lysed for protein extraction by utilizing the BioPlex Cell Lysis Kit (BIO-RAD, CA, USA) with modifications. Briefly, 500 μl of complete cell lysis buffer was added to frozen tissue and mechanically homogenized (Kinematica Polytron 1300D, Luzern, CHE). The homogenates were then stored at −80 °C overnight. Frozen homogenates were then allowed to thaw on ice and immediately sonicated (Branson SFX 150, CT, USA), and centrifuged for 10 min at 10,000 × g, followed by supernatant collection. Protein concentrations were measured using the Pierce Bicinchoninic Acid Assay Kit (Thermo Fisher Scientific, MA, USA) with minor modifications. Protein lysates were diluted to 1000 ng/μl with a complete cell lysis buffer and stored at −80 °C until further processing.
+ Open protocol
+ Expand
6

Melt Emulsification of PEA-Loaded SLNs

Check if the same lab product or an alternative is used in the 5 most similar protocols
SLNs loaded with PEA (PEA-SLNs) were prepared by the melt emulsification technique [33 (link),34 (link),35 (link),36 (link)]. PEA (15 mg) was dissolved in a stearic acid (40 mg)/cholesteryl stearate (30 mg) blend containing Span 85 (30 mg) melted at a temperature of 85 °C. Then, the aqueous phase (5 mL Milli-Q water) containing 0.3% Pluronic F68 was heated at the same temperature and added to the lipid phase. The emulsification was performed by ultrasounds (SFX150 Branson, Milan, Italy) for 1 min, followed by homogenization by Ultra-Turrax (T-25 basic, Ika Labortechnik, Staufen im Breisgau, Germany) at 24,000 rpm for 1.5 min and sonication for 1 min. The obtained oil-in-water emulsion was cooled in an ice bath under magnetic stirring for 15 min and then purified by dialysis membrane (MWCO 12–14,000 Da) for 1 h in 300 mL Milli-Q water.
The same procedure was used to prepare unloaded SLNs (U-SLNs). Labeled SLNs for the cell internalization study were obtained by adding 0.01% w/w Nile Red in the melted stearic acid and following the same method described above for both unloaded (U-SLNs-NR) and PEA-loaded (PEA-SLNs-NR) SLNs.
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!