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Autoflex 3 smartbeam maldi tof mass spectrometer

Manufactured by Bruker
Sourced in Germany

The Autoflex III Smartbeam MALDI-TOF mass spectrometer is a laboratory instrument designed for mass spectrometry analysis. It utilizes matrix-assisted laser desorption/ionization (MALDI) technology and time-of-flight (TOF) detection to analyze and identify various molecules, such as proteins, peptides, and small molecules. The core function of this equipment is to provide high-performance mass spectrometry capabilities for researchers and analytical laboratories.

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6 protocols using autoflex 3 smartbeam maldi tof mass spectrometer

1

Hydrophobic Peptide Synthesis and Purification

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The peptides were synthesized by manual fluorenylmethyloxycarbonyl (Fmoc) solid phase synthesis at elevated temperature using our previously reported protocol optimized for hydrophobic peptides36 (link). Cleavage of the peptides from resin and side chain deprotection was simultaneously achieved by treatment with a mixture of trifluoroacetic acid (TFA)/H2O/triisopropyl silane (TIS) (95:2.5:2.5, v/v) for 2 hours at room temperature. The crude peptides were precipitated and washed with cold methyl-tert-butyl ether, and purified on a preparative reverse phase HPLC system (Varian ProStar 210) with a C4 preparative column (Vydac), using a linear gradient of solvent A (0.1% TFA in Millipore H2O) and solvent B (90% CH3CN, 10% H2O, 0.1% TFA). The identities and the purities of the purified peptides were confirmed by MALDI-TOF mass spectrometry using a Bruker Autoflex III Smartbeam MALDI-TOF mass spectrometer. Purity of the obtained peptides was additionally evaluated on a Shimadzu Prominence UFLC instrument with an analytical Zorbax Eclipse XDB-C18 column (4.6 mm×150 mm).
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2

MALDI-TOF and NMR Analysis of Samples

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Samples were prepared in 2 mg/mL water solution and filtered with a 0.22 μm syringe filter (Pall, Ann Albor, MI, USA). Then, 1 μL of sample was mixed with the same volume of 2,5-dihydroxybenzoic acid (Sigma-Aldrich, St. Louis, MO, USA) as a sample matrix and air-dried for MALDI-TOF analysis. The analysis was performed on an Autoflex III Smart Beam MALDI-TOF mass spectrometer (Bruker, Bremen, Germany) in the positive ion mode. For 1H NMR spectral analysis, samples were dissolved in D2O (30 mg/mL), and the spectra were carried out on a Bruker AV 500 MHz (Bruker, Karlsruhe, Germany).
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3

MALDI-MS Profiling of Bee Hemolymph

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To obtain MFPs by MALDI mass spectrometry (MALDI BeeTyping®), haemolymph samples were handled according to the protocol published by Arafah et al. (2019) with modifications to optimise sample analysis [63 (link)]. Each individual haemolymph sample was analysed with an AutoFlex III Smartbeam® MALDI-TOF mass spectrometer (Bruker Daltonics, Germany). MFPs were acquired following the Bruker BioTyper® recommendations (matrix, method of sample deposition, and detection) with minor adjustments. Briefly, the haemolymph samples were diluted 1:10 in water acidified with 1% TFA. A volume of 1 µL from each diluted sample was spotted on a MALDI MTP 384 polished ground steel plate (Bruker Daltonics), dried under gentle vacuum, and then mixed with 1 μL of 4-HCCA. Following co-crystallisation of the haemolymph spots with the matrix droplet, MALDI MFPs were recorded in a linear positive mode and in an automatic data acquisition using FlexControl software v3.4 (Bruker Daltonics). The samples were manually spotted in triplicate, each of the three spots being read three times.
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4

Synthesis and Characterization of Thiacalix[4]arene and Tetrazolyl Isophthalic Acid

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p-tert-Butylthiacalix[4]arene (H4TC4A)67 and 5-(1H-tetrazol-1-yl)isophthalic acid (H2L)68 were synthesized according to a literature method, respectively. Other reagents were purchased from commercial sources and used as received. TGA was performed on a Perkin Elmer Pyris1 TGA thermo-gravimetric analyzer. FT-IR spectra using KBr pellets were taken on a Perkin Elmer Spectrum GX spectrometer. UV-vis spectra were recorded on an Agilent Cary 5000 spectrometer. MALDI-TOF mass data were collected on a Bruker Autoflex III Smartbeam MALDI-TOF mass spectrometer. CHNS elemental analysis was performed on an EAI CE-440 instrument. Magnetic susceptibility measurements were performed on a Quantum Design MPMS XL-5 SQUID system in the temperature range of 2–300 K, and diamagnetic corrections for the sample and sample holder were applied. X-ray photoelectron spectroscopic (XPS) measurements were carried out with an ESCALAB 250Xi using a monochromatic Al Kα X-ray source (1486.6 eV).
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5

MALDI-TOF Protein Analysis Protocol

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MALDI spectra were acquired with a Bruker Autoflex III Smartbeam MALDI-TOF mass spectrometer (Bruker Daltonics, Billerica MA) in linear positive ion mode in the 4-20 kDa mass range. The laser spot was set to “Ultra” and laser attenuator was manually adjusted prior to each experiment for optimal fluence. Spectra were acquired by flexImaging 2.1 (Bruker) with a raster increment of 70 μm.
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6

Hydrophobic Peptide Synthesis and Purification

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The peptides were synthesized by manual fluorenylmethyloxycarbonyl (Fmoc) solid phase synthesis at elevated temperature using our previously reported protocol optimized for hydrophobic peptides36 (link). Cleavage of the peptides from resin and side chain deprotection was simultaneously achieved by treatment with a mixture of trifluoroacetic acid (TFA)/H2O/triisopropyl silane (TIS) (95:2.5:2.5, v/v) for 2 hours at room temperature. The crude peptides were precipitated and washed with cold methyl-tert-butyl ether, and purified on a preparative reverse phase HPLC system (Varian ProStar 210) with a C4 preparative column (Vydac), using a linear gradient of solvent A (0.1% TFA in Millipore H2O) and solvent B (90% CH3CN, 10% H2O, 0.1% TFA). The identities and the purities of the purified peptides were confirmed by MALDI-TOF mass spectrometry using a Bruker Autoflex III Smartbeam MALDI-TOF mass spectrometer. Purity of the obtained peptides was additionally evaluated on a Shimadzu Prominence UFLC instrument with an analytical Zorbax Eclipse XDB-C18 column (4.6 mm×150 mm).
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