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Ki 67

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Ki-67 is a nuclear protein that is associated with cellular proliferation. It is strictly related to cell division, being present during all active phases of the cell cycle (G1, S, G2, and mitosis), but is absent from resting cells (G0). Ki-67 is commonly used as a marker to determine the growth fraction of a given cell population.

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10 protocols using ki 67

1

Brain Tissue Perfusion and Sectioning

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After image acquisition, the animals were anesthetized and transcardially perfused with a buffered saline solution and 4% paraformaldehyde (PFA). The brains were removed and stored in PFA for 24 hours; they were then cryoprotected in a 40% sucrose solution for 48 hours. Subsequently, 40μm thickness coronal sections were cut using a cryostat (Leica) and stained using standard procedures for hematoxylin-eosin, Prussian Blue staining and for immunohistochemical staining was used human primary antibodies included the following: glial fibrillary acidic protein (GFAP) (1:200), Ki-67 (1:20) and VEGFR-1 (1:150) (Epitomics, Inc.), according Pavon et al.7 (link).
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2

Immunoblotting Analysis of Signaling Pathways

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Immunoblotting was performed using standard methods. After treatment with the
indicated drugs, cells were washed with cold PBS and lysed in buffer containing 20 mM
Tris pH 7.5, 150 mM NaCl, 100 mM MgCl2, 1% Nonidet P-40 and 10% glycerol
supplemented with HALT protease and phosphatase inhibitor cocktail (Thermo Fisher
Scientific) using a Q800R sonicator (Qsonica, Newtown, CT). Lysates were centrifuged
at 16,000×g for 5 min at 4°C. Protein concentrations
were determined by BCA assay (Thermo Fisher Scientific). Proteins were resolved by
SDS-PAGE and transferred to a polyvinylidenes difluoride membranes (Biorad) using the
Transblot Turbo Transfer System (Biorad, Hercules, CA). Immunoblotting was performed
per each antibody manufacturer's specifications. Antibodies used were pEGFR
(Y1068), EGFR, pAKT (S473), AKT, pERK (T202/Y204), ERK, cleaved PARP, cleaved
caspase-3, SOX2, BIM, phospho-FOXO1 (T24)/FoxO3a (T32), FOXO1, FOXO3 (Cell Signaling
Technology, Beverly, MA), GAPDH (EMD Millipore, Billerica, MA), Ki67 (Epitomics,
Burlingame, CA), phospho-FOXO6 (S184) (Abcam, Cambridge, MA), FOXO6 (Proteintech,
Chicago, IL), CD133, GKLF, OCT4, MYC (Santa Cruz, Dallas, TX), CD44 and CD24 (BD
Biosciences, San Jose, CA), and TY1 (Diagenode, Denville, NJ).
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3

Immunohistochemical Analysis of Ki-67 and CK-12

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The fixed tissue sections were blocked at room temperature with 3% bovine serum albumin (Sigma, USA) and incubated with primary antibodies for an overnight at 4° C. The used primary antibodies were against Ki-67 (#4203-1, Epitomics, 1:100) and CK-12 (sc-25722, Santa Cruz Biotechnology). Then, the sections were washed and incubated with fluorescein-conjugated secondary antibodies (Jackson ImmunoResearch) for 1h at room temperature and counterstained with DAPI. The imaging was performed with the same light intensity and exposure for all the samples, using a confocal microscope (LSM 710, Carl Zeiss, Germany). The Images were analyzed with ZEN Lite software (Zeiss, Germany).
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4

Immunohistochemical Analysis of Cell Proliferation

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All of the fixed samples were dehydrated in a graded alcohol series. Tissue samples were eventually embedded in paraffin before being sectioned. The rehydrated sections were employed for immunostaining. Primary antibodies specific to Ki67 (Epitomics, Burlingame, CA, USA), PH3 (Cell Signaling Technology, USA) and PCNA (Cell Signaling Technology, Beverly, MA, USA) were used. Sections incubated without primary antibodies were used as negative controls. High-temperature heating was used for antigen retrieval. A Histostain-SP Kit (Zhongshan Golden Bridge Biotechnology, Beijing, China) was applied to visualize the antigen. For immunofluorescence, liver sections (8 μm) were fixed in 4% paraformaldehyde solution. Primary antibodies specific to p27 (ABclonal Technology, Wuhan, China) were used, and the sections were stained with Cy3-labeled secondary antibodies (Jackson ImmunoResearch Laboratories, West Grove, PA, USA) before being counterstained with 4′,6-diamidino-2-phenylindole. Immunofluorescence images were captured via a Leica TCS SP5 confocal scanning laser microscope (Leica, Solms, Germany).
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5

Immunoblotting of Liver Tissue Lysates

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Frozen liver tissue was homogenized in RIPA buffer (50 mM Tris, 100 mM NaCl, pH 8.0, 10 mM EDTA, pH 7.0, 0.4% v/v Triton X-100, 10 mM nicotinamide), containing protease inhibitor cocktail (Roche) and phosphatase inhibitors (2 mM sodium orthovanadate, 1 mM sodium pyrophosphate, 10 mM sodium fluoride, 250 nM microcystin LR). Cells were lysed in HES-SDS lysis buffer (250 mM sucrose, 20 mM HEPES, pH 7.4, 1 mM EDTA, 2% SDS). Lysates were centrifuged at 16,000 g at 4 °C for 10 min. Laemmli buffer was added to supernatant, and samples were heated to 65 °C for 10 min. Proteins were resolved using SDS–polyacrylamide gel electrophoresis and transferred onto nitrocellulose membrane. Membranes were blocked in 5% milk, incubated with primary antibody at a concentration of 1:1,000 in TBST with 5% BSA overnight at 4 °C, then incubated with fluorescent-tagged secondary antibody at a concentration of 1:10,000 and read using a LI-COR Odyssey infrared imaging system. Primary antibodies used were: pan-ACC (Cell Signaling 3676), Ki67 (Epitomics 4203 for IHC), Cleaved CASP3 (Cell Signaling 9661), γH2A.X (Cell Signaling 9718S) and 14-3-3 (Santa Cruz 1657).
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6

Histochemical and Immunohistochemical Analysis of Tumor Lesions

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Histochemical staining (hematoxylin and eosin) and IHC were performed according to a previously published standard protocol (22 (link)). IHC analysis of tumor lesions using Ki-67 (4203-1; Epitomics, Burlingame, CA, USA), PH3 (9701; Cell Signaling Technology, Danvers, MA, USA), Gab2 (3239; Cell Signaling Technology), NF-κB (sc-8008; Santa Cruz Biotechnology, Santa Cruz, CA, USA), and CD68 (ab955; Abcam, Cambridge, United Kingdom) Abs was performed to detect the number of proliferating cells and/or inflammatory cells.
For ELISA, mouse blood was collected and incubated for 2 h at room temperature. Serum was acquired after centrifugation for 3 min at 9000 rpm, and TNF-α and IL-6 serum levels were measured by using ELISA kits according to manufacturer instructions (Blue Gene, Shanghai, China).
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7

Immunofluorescence Analysis of 3D Calu-3 Cultures

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Calu-3 in 3D culture were stained essentially as described for MDCK cysts [9 (link)]. Primary antibodies utilized were: Ki-67 (Epitomics, 2642-1), Cleaved Caspase 3 (Cell Signaling Technology, 9661L), JAM-A (BD Biosciences, 612120), Muc1 (Epitomics, 2900-1), GM130 (BD Biosciences, C65120), β-catenin (Santa Cruz, sc-7199), NHERF1 (Abcam, ab3452), Ezrin (BD Biosciences, 610603), Cleaved Caspase 8 (Cell Signaling Technology, 9496), β1-integrin (BD Biosciences, 610467), pY416-c-Src (Cell Signaling Technology, 6943P), pY1105-p190 (Abcam, ab55339). Alexa fluorophore-conjugated secondary antibodies (1:250) or Phalloidin (1:200) (both Invitrogen) and Hoechst to label nuclei (10 μg/ml), were utilized. Imaging was performed on a Zeiss 510 Confocal Microscope, using a 63x oil immersion lens. Image processing was performed using ImageJ. Images shown are representative of 3 separate experiments.
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8

Immunohistochemistry Analysis of Xenograft Tumors

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Immunohistochemistry with the tumour tissues collected from the xenograft study was performed as previously described (Lokman et al., 2013). Briefly, the formalin‐fixed tumour tissues were processed, embedded in paraffin and then sectioned (5 μm). The tissues then underwent antigen retrieval (5 min at 750 W, 15 min at 350 W in a microwave) in 10 mm citrate buffer (pH 6.5). The tissues were immunostained with Ki67 (rabbit monoclonal, 1/400; Epitomics, Burlingame, CA, USA) as described previously (Ricciardelli et al., 2011). Streptavidin‐peroxidase conjugate (1/500; Dako) and diaminobenzidine tetrahydrochloride (DAB; Sigma‐Aldrich) were used to visualise the staining. Images were recorded using a NanoZoomer Digital Pathology System (Hamamatsu Photonics, SZK, Japan).
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9

Immunohistochemical Characterization of Tissues

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Immunohistochemistry was performed in 5-μm-thick paraffin-embedded sections using specific antibodies as indicated. Tissues were fixed in 10% neutral buffered formalin. Microwave heating was used for antigen retrieval. For immunohistochemistry analysis, antibodies specific to ERα (Dako, 1:100), p-ERα (Santa Cruz Biotechnology, 1:100), progesterone receptor (PR) (DAKO, 1:100), Ki-67 (Epitomics, 1:200), COX2 (Santa Cruz Biotechnology, 1:200), CD31 (BD, 1:50) were used in 5-μm thick paraffin-embedded sections. A Histostain-SP Kit (Zhongshan Golden Bridge Biotechnology) was used to visualize the antigen. For immunofluorescence, double-immunofluorescence staining for SMA (Bio Genex, 1:100) and cytokeratin (DAKO, 1:100) was performed in paraffin-fixed sections and secondary antibodies conjugated with Cy2 and Cy3 dyes were used, respectively. Immunofluorescence for Laminin (Sigma, 1:200) and cytokeratin was performed in fresh-frozen sections. Nuclear staining was performed using Hochest 33343 (Sigma, 0.1 μg/ml). All frozen sections were fixed in 10% neutral buffered formalin and incubated with primary antibody at 4 °C overnight, followed by incubation with secondary antibody at room temperature for 1 h. Immunofluorescence images were captured in a Zeiss LSM 510 confocal scanning laser microscope.
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10

Western Blot Analysis of Signaling Proteins

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For Western blot analysis, the following antibodies were used (working dilutions are given in brackets). Rabbit polyclonal antibodies: anti-P(S473)-AKT (1:2000, D9E, Cell Signaling), anti-Bcl-3 (1:1000, C-14, Santa Cruz), anti-P(Thr202, Tyr204)-ERK1/2 and anti-ERK1/2 (both 1:2000, Cell Signaling), anti-ERα (1:2000, Santa Cruz, HC-20), anti-IGF1Rβ (1:2000, Cell Signaling), anti-P(Tyr705)-STAT3 (1:1000, D3A7, Cell Signaling) and anti-STAT3 (1:1000, 79D7, Cell Signaling); rabbit monoclonal antibodies: anti-integrin β1 (1:2000, EPR1040Y, Abcam), anti-GAPDH (1:5000, Ambion) and Ki67 (1: 2000, Epitomics, clone EPR3610); mouse monoclonal antibodies: anti-(pan)AKT (1:1000, 40D4, Cell Signaling), anti-E-cadherin (1:5000, BD Transduction Lab.) and anti-HIF1α (1:1000, BD Transduction Lab.). Anti-CAIX was kindly provided by S. Pastorekova. Secondary antibody conjugates (anti-rabbit/anti-mouse horse radish peroxidase, 1:2000) were purchased from Cell Signaling.
Fulvestrant (LKT Laboratories) was purchased from Biomol (Hamburg/Germany), PQ404 from Calbiochem and recombinant human insulin was from Sigma-Aldrich.
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