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3 protocols using anti mll1c

1

Chromatin Immunoprecipitation (ChIP) Assay

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Antibodies used included anti-Flag (Sigma, F3165-5MG, clone M2), anti-MLL1C (Bethyl, A300-374A), anti-RbBP5 (Bethyl, A300-109A), anti-ASH2L (Bethyl, A300-112A), anti-WDR5 (Bethyl, A302-430A), anti-GFP (Clontech, 632377, clone JL-8), anti-trimethyl-Histone H3 (Lys4) (EMD Millipore, 07-473), anti-LANA LN53 (Millipore, MABE1109), goat anti-rat IgG (H + L) Alexa Fluor 488 (Invitrogen A11006), goat anti-rabbit IgG (H + L) Alexa Fluor 647 (Invitrogen A21245), human anti -LANA sera adsorbed against uninfected cell extract for western blot or affinity purified against carboxy-terminal LANA for ChIP, Anti-T7 tag® antibody (Abcam, ab9138), and anti-alpha-tubulin (Sigma T9026, cline DM1A).
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2

Histone Modification Antibody Panel

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The following antibodies are used in this study: anti-H3K4me1 (Cell Signaling Technology [CST], 5326), anti-H3K4me2 (generated in house), anti-H3K4me3 (CST, 9751), anti-H3K27ac (CST, 8173), H3K27me3 (CST, 9733), anti-MLL3 NT (generated in house), anti-MLL3 MT (generated in house), anti-MLL4 NT (generated in house), anti-MLL4 CT (generated in house), anti-MLL2 (generated in house), anti-SET1A (generated in house), anti-Menin (CST, 6891), anti-MLL1C (CST, 14197), anti-RBBP5 (Bethyl Laboratories, A300-109A), anti-NCOA6 (Bethyl Laboratories, A300-410A), anti-UTX (CST, 33510), anti-PTIP (Bethyl Laboratories, A300-370A), ASH2L (CST, 5019), H3 Ser10-p (CST 53348), CDT1 (CST, 8064), Cyclin B1 (CST, 12231), Geminin (CST, 52508), Cyclin E1 (CST, 20808), Cyclin A2 (CST, 91500), p-cdc2 (CST, 4539), PARP (CST, 9542) Caspase3 (CST, 9662), anti-GART (Santa Cruz Biotechnology, sc-166447), anti-PAICS (Proteintech, 12967-1-AP), Hsp90 (Santa Cruz Biotechnology, sc-13119), and anti-β-tubulin (Developmental Studies Hybridoma Bank, E7). Western blot analysis was performed as previously described (53 (link)).
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3

Immunofluorescence analysis of LANA, MLL1, and WDR5

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1 × 105 BCBL1 cells were incubated in a well of a 12-well slide chamber (Ibidi) in 200 μl RPMI with 10% BGS for 24 h at 37°C. Supernatant was removed and cells fixed with 4% paraformaldehyde in PBS for 15 min. After fixation, cells were rinsed ×2 with 1× PBS, and blocked/permeabilized with block/perm buffer (10% BGS, 100 mM glycine, 0.2% Triton-X100 in PBS) with the addition of 5 μg/sample of human IgG. After 30 min, the block/perm buffer was removed and cells were incubated with primary antibodies anti-LANA LN53 (Millipore) and anti-MLL1C (Bethyl), or anti-LANA LN53 and anti-WDR5 (Bethyl) diluted in block/perm buffer at 1:200. After 1h of incubation at room temperature, antibodies were removed, and cells washed ×2 with 1× PBS. Secondary antibodies goat anti rat Alexa Fluor 488 (Invitrogen) and goat anti rabbit Alexa Fluor 647 (Invitrogen)) were added at 1:1000 dilutions, and incubated for 1h at room temperature in dark. Cells were washed ×2 with 1× PBS and coverslips mounted using ProlongGold antifade with DAPI (Life Technologies). Images were captured using a Zeiss LSM 800 confocal microscope and 63× objective. Co-localization was quantified using Zen Blue software and Pearson's correlation coefficient.
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