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Bca kit

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The BCA kit is a colorimetric assay used for the quantitative determination of total protein concentration. It employs the bicinchoninic acid (BCA) method to measure the reduction of copper ions (Cu2+ to Cu+) by proteins in an alkaline environment, resulting in a purple-colored reaction that can be measured spectrophotometrically.

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1 705 protocols using bca kit

1

Proteomic Profiling of Bladder Cancer Cell Lines

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T24, 5637, RT4, 253J and J82 cells were collected and total protein was collected after lysis and centrifugation. A BCA kit (Thermo Fisher Scientific, Sunnyvale, CA, USA) was used to detect the levels of GP73, E‐cadherin, N‐cadherin and vimentin for screening cell lines. The protein expression levels of GP73, TGF‐β1, Smad2, E‐cadherin, N‐cadherin, vimentin, p‐Smad2 and WT1 in transfected 5637 and 253J cells were determined.
Protein concentrations were measured using a bicinchoninic acid (BCA) kit (Thermo Fisher Scientific). Proteins were separated using 12% sodium dodecyl sulphate‐polyacrylamide gel electrophoresis (SDS‐PAGE), transferred to a polyvinylidene fluoride (PVDF) membrane and then blocked with skimmed milk at room temperature for 1 hr. The samples were incubated overnight with monoclonal antibodies for GAPDH (ab8245), GP73 (ab109628), TGF‐β1 (ab64715), Smad2 (ab76055), p‐Smad2 (ab53100), E‐cadherin (ab33875), vimentin (ab8978) and WT1 (ab201948) (1:300 dilution; Abcam Inc.) at 4°C. After washing three times, the samples were incubated with second antibodies at room temperature for 1 hr. After the membrane was washed for three times, an ECL kit was used to develop Western blotting bands. GAPDH was used as an internal control, and ImageJ2x software Rawak Software, Inc. Germany was used to calculate the relative expression levels of the target proteins.
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2

Phosphorylation of c-JUN Transcriptional Activator

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For phosphorylation of GST-c-JUN TAD, or the 15N isotope-labeled protein version, 75 μM of substrate was incubated with 290 U recombinant active JNK1 (Proqinase) in 10 mM K2HPO4 pH 6.8, 50 mM NaCl, 1 mM ATP, 2 mM DTT, 5 mM MgCl2 at 20 °C for the indicated times. For phosphorylation of endogenous JNK and c-JUN, cells were treated with 50 μM JNKi for 2 h followed by 15 ng/ml anisomycin treatment for the indicated times at 37 °C. Lysates for SDS-PAGE were prepared in 300 μl RIPA buffer (Thermo Fisher) supplemented with protease inhibitor (Sigma) and phosphatase inhibitor (Cell Signalling). Protein quantification was performed with the BCA kit (Thermo Scientific) and densitometry analysis of the immunoblot with the Image Studio Lite Software (Licor).
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3

Western Blot Analysis of TGF-β1 Signaling

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After homogenizing the tissues and cells using lysis buffer and centrifugation at 12,000 g for 20 min at 4 °C, protein amounts from all samples were measured with the BCA-kit (Thermo Fisher Scientific; Waltham, MA, USA). Protein samples (50 μg) were loaded onto sodium dodecyl sulfate polyacrylamide gel electrophoresis, and then transferred onto an immobilon-FL transfer membrane (Millipore, Billerica, MA, USA) in a transferring buffer. The membrane was blocked with 5% milk in tris-buffered saline tween-20 (TBST) for 1 h and then incubated overnight at 4 °C with antibodies against TGF-β1, p-smad2, smad2, p-smad3, smad3, smad4, and C-C chemokine receptor (CCR) 2, which were purchased from Cell Signaling Technology (Boston, MA, USA). GAPDH (MB001) was purchased from Bioworld Technology (St Louis Park, MN, USA). The blots were scanned using a two-color infrared imaging system (LI-COR Biosciences: Lincoln, NE, USA). Specific protein expression levels were normalized to GAPDH protein for total cell lysates.
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4

Caspase Signaling Pathway Analysis

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Cells were harvested in lysis buffer (Beyotime, Jiangsu, China) containing 1% Complete Mini-Protease Inhibitor Cocktail (Roche Diagnosis, Switzerland) and 5 mM NaF. Protein extractions were quantified using a BCA kit (Thermo Scientific, Massachusetts) and heated for 10 minutes at 100°C. Then, 30 μg of protein was resolved on a 12% sodium dodecyl sulfate-polyacrylamide gel electrophoresis gel and transferred to a nitrocellulose membrane (Merck Millipore, Germany). After being blocked for 1 hour at 37°C, the membranes were immunoblotted with different antibodies (GAPDH [1:2000], caspase-8 [1:1000], caspase-3 [1:1000], PARP [1:500]) overnight at 4°C. The membranes were then washed with TBST and incubated with HRP-conjugated goat anti-rabbit or anti-mouse antibody (1:5000) for 1 hour at room temperature. Finally, blots were detected using a ChemiDoc MP Imaging System (Bio-Rad) with a SuperEnhanced chemiluminescence detection kit (Applygen, Beijing, China). To better compare changes in the caspase signaling pathway, gray values were calculated.
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5

Quantifying Intracellular ATP Levels

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The amount of intracellular ATP was measured as described previously (Garcia et al., 2008 (link); Price et al., 2011 (link)). WT, lkh1Δ, and lkh1Δ+LKH1 strains were grown in liquid YPD medium for 16 h at 30°C and subcultured in fresh liquid YPD medium at 30°C until the optical density at 600 nm of the culture medium ranged between 0.7 and 0.8. Cultured samples were harvested and washed with PBS. Samples were resuspended in 30 mL PBS and 15 mL aliquots of each sample were centrifuged. Pellets for ATP analysis were resuspended in 1 mL of 50 mM HEPES (pH 7.7) and disrupted using a bead beater (Precellys) for 45 s. The disrupted samples were centrifuged at 5,000 rpm at 4°C for 10 min, and the supernatants were collected to determine ATP concentrations using an ATP bioluminescence assay kit (Sigma, #FLAA). Protein concentrations used to normalize the ATP concentration of each sample were measured in an aliquot of the supernatant from each sample using a BCA kit (Thermo Fisher, #23227).
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6

Protein Expression Analysis by Western Blot

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Cells and exosomes were lysed with lysis buffer containing protease and phosphatase inhibitors, and the concentrations of the proteins were determined using a BCA kit (Thermo Fisher Scientific, USA). Total protein lysates were separated by SDS‒PAGE and transferred to PVDF membranes (Millipore, USA). The membranes were incubated with the corresponding primary antibodies overnight at 4 °C and then exposed to secondary antibodies for 2 h. Western blot bands were visualized using an enhanced chemiluminescence (ECL) kit (Keygene; China). The protein expression levels were normalized to the β-actin levels. The following antibodies from Abcam, USA, were utilized: Acadm, TSG101, HSP70, CD63, and CD9. The relative protein expression was quantified using ImageJ.
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7

Protein Extraction and Western Blot Analysis

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Firstly, RIPA solution (Beyotime, Shanghai, China) was used to extract total proteins from mouse brain tissue or cells. Total protein concentration was measured and quantified using a BCA kit (Thermo Fisher Scientific, Grand Island, NY, USA). Protein samples mixed with 5×loading buffer were denatured in boiling water, separated by gel electrophoresis and transferred to PVDF membrane (Merck Group, Darmstadt, Germany). Closed with 5% skim milk for 1h and incubated with the following primary antibodies at 4° C overnight: rabbit monoclonal anti-Nampt (1:1000; 11776-1-AP; Proteintech, China), β-actin (1:1000; ab241153; Abcam), rabbit monoclonal anti-METTL3 (1:1000; 15073-1-AP; Proteintech). PVDF membrane is then paired with corresponding HRP labeled anti-Rabbit IgG (1:4000; #7074S; CST) was incubated at room temperature for 2h. Strip visualization was done using the ECL kit (Thermo Fisher Scientific, USA). The results were quantified using software ImageJ.
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8

Western Blotting Protocol for Protein Analysis

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Tissues or cells were lysed with RIPA buffer containing protease and phosphatase inhibitor cocktails (Sigma-Aldrich). Protein concentrations were measured by using BCA kit (Thermo Fisher Scientific). A total of 30 μg of lysed protein was separated by SDS-PAGE and then transferred onto a nitrocellulose membrane. After blocking with 5% no-fat milk in TBST for 1 hour at room temperature, the membranes were incubated with primary antibodies overnight at 4°C (Supplemental Table 1). Membranes were washed and probed with IRDye 800CW– or IRDye 680RD–conjugated secondary antibody (LI-COR Biosciences) for 1 hour at room temperature. Detection was performed using a LI-COR Odyssey CLx imaging system, and fluorescence intensity was quantified using Image Studio Lite version 5.2.5 (LI-COR Biosciences).
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9

Western Blot Analysis of mTOR, GLT1, and BDNF

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Frozen PFC tissues in each group (n = 3) of mice were homogenized in ice-cold radio-immunoprecipitation assay (RIPA) lysis buffer containing protease and phosphatase inhibitors cocktail (Pierce Biotechnology, Rockford, IL, United States). Lysates were centrifuged at 12,000 × g for 30 min at 4°C. The protein concentration of each sample lysate was determined with the BCA kit (Thermo Scientific, Rockford, IL). Each sample (25 μg total protein) was separated on 10% SDS polyacrylamide gel electrophoresis (PAGE) gels and transferred to PVDF membranes (0.22 μm; Millipore, CA). Membranes were then incubated with anti-mTOR (1:1,000, Cell Signaling), anti-phospho-mTOR (1:1,000, Cell Signaling), anti-GLT1 (1:1,000, Santa Cruze), BDNF (1:800, Abcam, United States) and anti-GAPDH (1:2,000, Millipore, CA) at 4°C overnight. The membranes were then incubated with Alexa Fluor800-conjugated antibody (1:10,000, Invitrogen, Eugene, OR) for 60 min. Target bands were captured with the fluorescence scanner (Odyssey Infrared Imaging System, LI-COR Biotechnology, Lincoln, NE) and quantified with Image J.
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10

Western Blot Analysis of EMT and Epigenetic Markers

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OC cells were lysed in cell lysis buffer (Beyotime) containing protease and phosphatase inhibitors to extract the total protein. The protein concentration was evaluated by a bicinchoninic acid (BCA) kit (Thermo Fisher). Then, 30 μg protein sample was run on 12% SDS-PAGE and transferred onto PVDF membranes (Millipore, Billerica, MA, USA). After being blocked in 5% bovine serum albumin, the membranes were cultured with the primary antibodies against E-cadherin (1:50, ab1416, Abcam, Inc., Cambridge, MA, USA), N-cadherin (1:5000, ab76011, Abcam), Vimentin (1:1000, ab92547, Abcam); PLK1 (1:500, #4535, Cell Signaling Technology (CST), Beverly, MA, USA), KDM4B (1:5000, ab191434, Abcam), H3K9me3 (1:1000, ab176916, Abcam), and GAPDH (1:5000, ab8245, Abcam) at 4 °C overnight. Then, the membranes were stained with the secondary antibodies anti-mouse IgG H&L (HRP) (1:10,000, ab205719, Abcam) and goat anti-rabbit IgG H&L (HRP) (1:10,000, ab205718, Abcam) at 37 °C for 45 min. The protein blots were developed by enhanced chemiluminescence (Millipore) and examined on a gel imaging system (Bio-Rad, Hercules, CA, USA). GAPDH was set as the control, and the signal intensity was examined by Image J.
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