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4 protocols using caspase 11

1

Western Blot Analysis of Apoptosis Signaling

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Cell lysates were prepared with an isotonic buffer (10 mM HEPES, 5 mM MgCl2, 1 mM EGTA, 142 mM KCl with NP-40), in the presence of complete, EDTA-free, protease inhibitor cocktail (Roche). Samples were clarified, denatured with SDS buffer, and boiled. Proteins were separated by SDS-PAGE and then transferred to a polyvinylidene fluoride (PVDF) membrane (Biorad). Blots were probed with antibodies against caspase-11 (Sigma), caspase-1 (Genentech), phospho-cofilin, cofilin, Rac/Cdc42, and phospho-Rac (Cell Signaling), actin (Abcam), calreticulin (Stressgen). Detection was achieved using appropriate secondary antibodies conjugated with horseradish peroxidase (HRP), as previously described12 (link)14 (link)22 (link)79 (link).
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2

Colon Tissue Protein Expression Analysis

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Colon tissue was homogenised in RIPA buffer, clarified and normalised using the BCA method. 20 μg protein was run on 10–12% SDS-PAGE gels, transferred to nitrocellulose and probed with primary antibodies against caspase-11 (Sigma; C1354), caspase-1 (Santa Cruz; sc-514), IL-1β (Santa Cruz; sc7884), STAT1 (Cell Signalling; 9172), phospho-STAT1 (Cell Signalling; 7649), STAT3 (Cell Signalling; 8768), phospho-STAT3 (Cell Signalling; 9131), β-actin (AC-15, Sigma; A3854), Cytokeratin-18 (Santa Cruz; sc-31700) or Vimentin (abcam; EPR3776), followed by incubation with the appropriate HRP-secondary antibody.
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3

Immunoblotting of Apoptosis Regulators

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Tissues were lysed in buffer B150 (20 mM Tris-HCl pH 8.0, 150 mM KCl,
10% glycerol, 5 mM MgCl2, and 0.1% NP40) supplemented with
Complete-mini protease inhibitors (Roche Applied Science, Cat#
11836153001) and phosphatase inhibitors (Sigma Cat# S7920, 71768,
G6376). Protein lysates were separated on SDS-PAGE and transferred to
nitrocellulose membrane. Blots were probed with antibodies against Caspase-1 p20
(Genentech), Caspase-12 (Sigma, Cat# C7611), Caspase-11 (Sigma,
Cat# C1354), β-actin (Sigma, Cat# A1978), β
-tubulin (sc-9104), AKT (Cell signalling #4691), and P473 AKT (Cell
signalling #4060). Densitometry was performed using ImageJ (NIH).
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4

LPS and oxPAPC Binding to Caspases

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HEK293 cells were transfected with mammalian expression constructs for myc-tagged pro-caspase-4 or Flag-tagged pro-caspase11 in six-well plates using Lipofectamine 2000 (Invitrogen). Thirty-six hours post transfection, cells were lysed in 50 mM HEPES (pH 7.4), 150 mM NaCl, 2 mM EDTA, 10% glycerol, and 1% Triton X-100, supplemented with protease inhibitors (Roche) for 30 min. For LPS binding, total cell lysates (TCLs) were incubated with 1 μg ultra-pure biotinylated E. coli LPS (0111:B4; Invivogen) in the presence or absence of 100 μg oxPAPC (Invivogen) or unlabeled LPS for 2 h at room temperature and purified with immobilized NeutrAvidin (Thermo Scientific), washed three times in binding buffer, eluted by Laemmli buffer, and analyzed by immunoblotting using anti -c-myc (Santa Cruz) and anti-Flag antibodies (Sigma), and horseradish peroxidase-conjugated secondary antibodies, ECL detection (Thermo Scientific), and image acquisition (Ultralum). TCLs (5%) were also analyzed as indicated. For oxPAPC binding, TCL were incubated with 10 μg oxPAPC in the presence or absence of 100 μg LPS for 2 h and pulled down by 1 μg biotinylated E06 antibody, immobilized onto NeutrAvidin beads, then analyzed as described above. For endogenous caspase binding, BMDMs were primed with poly(I:C) for 16 h and TCLs were analyzed as described above for caspase-11 (Sigma).
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