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Paraformaldehyde (pfa)

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Paraformaldehyde is a solid polymer of formaldehyde used as a fixative in histology and cell biology applications. It is a white crystalline solid that releases formaldehyde gas upon heating or dissolution. Paraformaldehyde is used to preserve the structure and composition of biological samples for microscopic analysis.

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13 protocols using paraformaldehyde (pfa)

1

Immunofluorescence Staining of Transfected cMSCs

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Immunofluorescence was conducted as previously described (11 (link)). Transfected cMSCs were fixed with 4% paraformaldehyde (Wuhan Boster Biological Technology, Ltd., Wuhan, China) for 15 min at room temperature, washed in phosphate-buffered saline, then treated with 0.2% Triton (Sigma-Aldrich) for 15 min. Cells were incubated with goat polyclonal anti-Shox2 (cat. no. sc-21898, Santa Cruz Biotechnology Inc., Santa Cruz Biotechnology Inc.; 1:50) and rabbit polyclonal anti-Cx45 (cat. no. sc-25716, Santa Cruz Biotechnology Inc.; 1:50) primary antibodies overnight at 4°C. They were then incubated with donkey anti-goat IgG antibodies conjugated to Alexa Fluor 488 (cat. no. A-11055, Invitrogen, Thermo Fisher Scientific, Inc.; 1:100) for Shox2 and donkey anti-rabbit IgG antibody conjugated to Alexa Fluor 488 (A21206, Invitrogen, Thermo Fisher Scientific, Inc.; 1:100) for Cx45 for 60 min. After further washing, the cells were mounted with antifade mounting medium (Beyotime Institute of Biotechnology, Shanghai, China). The nuclei stained with 4′,6-diamidino-2-phenylindole (Sigma-Aldrich) was used as a location control. The fluorescent images were obtained with a Zeiss LSM710 laser confocal microscope (Carl Zeiss Microscopy GmbH, Jena, Germany). The results were analyzed with ZEN lite 2011 software (Carl Zeiss Microscopy GmbH).
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2

Evaluating Cell Migration and Invasion

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The migration and invasion of SW480 and SW620 cells were evaluated using Transwell assays. For cell invasion, 40 µl diluted Matrigel glue (Corning Incorporated) was evenly spread in the upper chamber (24-well) and allowed to solidify. Briefly, after the different treatments were completed, 2×106 SW480 and SW620 cells were resuspended in 200 µl serum-free medium and plated in the upper chamber of each Transwell (6.5 mm insert; 8.0 µm polycarbonate membrane; Corning Incorporated). Subsequently, 600 µl complete medium (containing 10% FBS) was placed into the lower chamber. After incubation for 48 h at 37°C in a 5% CO2 incubator, migrated or invaded cells that passed through the membranes were fixed in 4% paraformaldehyde (Wuhan Boster Biological Technology, Ltd.) for 20 min, washed once with PBS, and stained with 0.1% crystal violet (Sangon Biotech Co., Ltd.) for 30 min. Finally, images of the migrated and invaded cells were photographed and counted using a microscope (ix71; Olympus Corporation, ×200, magnification).
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3

Visualizing Osteoblast Mineralization via Alizarin Red S

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To visualize mineralization of the extracellular matrix as a marker of terminal differentiation, Alizarin Red S staining was performed. The MC3T3-E1 cells were seeded into 24-well plates at a density of 1×104 cells/cm2 and incubated in the presence of various concentrations (0, 0.01, 0.1 or 1 µM) of ZA for 21 days in a humidified atmosphere of 5% CO2 at 37°C. The cultured cells were washed with phosphate-buffered saline (PBS) three times and fixed with 4% paraformaldehyde (Wuhan Boster Biological Technology, Ltd.) for 15 min. The fixed cells were then stained at room temperature for 5 min with Alizarin Red S solution (Sigma-Aldrich). Following removal of the dye, the cells were washed with distilled water and images were captured with a digital camera (EOS 60D, Canon, Inc., Tokyo, Japan). Calcified nodules appear bright red following Alizarin Red S staining.
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4

Histopathological Analysis of Ileal Mucosa

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At 72 h after modeling, distal ileum specimens (~1 cm) were collected, fixed in 4% paraformaldehyde (Wuhan Boster Biological Technology, Ltd.) for 24 h at room temperature and embedded in paraffin. Then, 5-µm thick sections were cut and stained with H&E. The sections were stained with hematoxylin for 5 min and then dehydrated with 70 and 90% ethanol, followed by staining with eosin for 3 min; Images were obtained using a microscope (Olympus BX53; Olympus Corporation). Histopathology was assessed according to the Chiu grading system, and histopathological scores (0-5 scale) were calculated following observation by light microscopy at ×200 magnification. The Chiu scoring standard of the ileal mucosa is divided into six levels according to the severity of injury: i) 0, the intestinal mucosal epithelium is normal without injury; ii) 1, the intestinal mucosal subepithelial space is widened and the capillaries have hyperemia; iii) 2, the intestinal mucosal subepithelial space is further extended and elevated, and separation of the epithelium and lamina propria occurs; iv) 3, part of the villous epithelium of the intestinal mucosa falls off; v) 4, the intestinal mucosal villous epithelium completely falls off, and capillary hemorrhages can be observed; and vi) 5, the intestinal mucosal lamina propria disintegrates, and mucosal bleeding ulcer occurs (21 (link),22 ).
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5

Histopathological Analysis of Rat Cartilage

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The cartilage tissues from rats in the sham or OA groups were fixed with 4% paraformaldehyde (Wuhan Boster Biological Technology, Ltd.) at room temperature for 24 h, embedded in paraffin, cut into 4-µm thick sections and visualized under light microscope (Leica Microsystems GmbH) at x200 magnification after H&E staining.
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6

Tissue Microarray Construction and Evaluation

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Samples of 80 tumor tissues and 80 paracancerous epithelial tissues were selected for the construction of the tissue microarray. All samples were fixed with 4% paraformaldehyde (Wuhan Boster Biological Technology, Ltd., Wuhan, China), embedded in paraffin (Wuhan Boster Biological Technology, Ltd.), cut to the desired thickness of 3 µm, and affixed to slides. The slides were stained with hematoxylin and eosin (Wuhan Boster Biological Technology, Ltd.) and assessed by two histopathologists. Two representative tissue cores of each tissue block were selected for transfer to a master block using a manual tissue microarray instrument (ATA-27; Beecher Instruments, Inc., Sun Prarie, WI, USA). The master block was cut to the desired thickness of 4 µm, and sections were placed on 3-aminopropyltriethoxysilane-coated slides (Wuhan Boster Biological Technology, Ltd.).
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7

Fluorescent Tracing of Dorsal Root Ganglia

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At 1 week post-fluorescent tracer injection, the ipsilateral DRG of L4, L5 and L6 were removed and fixed in 4% paraformaldehyde (Wuhan Boster Biological Technology, Ltd.). The DRGs were then dehydrated, embedded in optimal cutting temperature compound (Applygen Technologies Inc., Beijing, China) and sectioned coronally using a microtome (Leica CM1510S; Leica Microsystems, Wetzlar, Germany). The fluorescence was examined under a fluorescent microscope (Olympus IX71; Olympus Corporation, Tokyo Japan), and the numbers of FR- and FG-positive neurons were analyzed using ImagePro Plus version 6.0 (Media Cybernetics, Inc., Rockville, MD, USA).
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8

Transwell Migration Assay for hBMSCs

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Migration assays were performed in Transwell inserts (8-µm pores; Corning, Inc.). Briefly, 700 µl fTEB-CM was added to the lower chamber. A total of 2x104 hBMSCs in 200 µl serum-free medium (Cytiva) were seeded in the upper chamber and allowed to migrate for 48 h at 37˚C. Next, cells in the upper chamber (non-migrating cells) were removed using a cotton wool swab. Migrated cells in the lower chamber were washed with PBS, fixed with 4% paraformaldehyde (Wuhan Boster Biological Technology, Ltd.), stained with DAPI for 15 min at room temperature and observed under a fluorescent microscope (Olympus Corporation). The number of migrated cells was counted from 10 random high-power fields (magnification x100) and the mean taken. TEB-CM, DBM-CM and DMEM/F12 containing recombinant human SDF-1 (20 ng/ml) served as controls. Migration assays were performed on five batches of hBMSCs from different donors.
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9

Transwell Invasion Assay for Cell Lines

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The MCF7, T47D, MCF7R or T47DR cells were seeded in the upper chamber of a Transwell insert (3×105 cells/well; EMD Millipore) coated with Matrigel (1:7.5) in 200 µl of serum-free medium. Supplemented RPMI-1640 medium (Gibco; Thermo Fisher Scientific, Inc.) containing 10% FBS (Gibco; Thermo Fisher Scientific, Inc.) was added to the lower chamber. The cell lines were incubated for 24-48 h at 37°C, and the cells were fixed with 4% paraformaldehyde (Wuhan Boster Biological Technology, Ltd.) for 15 min at room temperature and stained with 0.5% crystal violet (Wuhan Boster Biological Technology, Ltd.) for 5 min at room temperature. the number of migrating cells was determined in 5 random fields at an inverted light microscope (magnification, ×200; TE2000-U; Nikon Corp.).
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10

Immunofluorescence Analysis of Engineered Stem Cells

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Immunofluorescence was performed according to previously reported methods (10 (link)). Transfected cMSCs (1.5×104 cells/cm2) were fixed with 4% paraformaldehyde (Wuhan Boster Biological Technology, Ltd., Wuhan, China) for 15 min at room temperature, washed in phosphate-buffered saline (PBS; AR0030; Wuhan Boster Biological Technology, Ltd.), then treated with 0.2% Triton X-100 (T8787; Sigma-Aldrich) for 15 min. Cells were incubated with rabbit polyclonal anti-HCN4 antibody (1:100; ab69054; Abcam, Cambridge, UK) overnight at 4°C. Following washing three times with PBS for 5 min, the cells were incubated with Alexa FluorTM 647-conjugated donkey anti-rabbit IgG (1:200; A-31573; Invitrogen) for 60 min at 25±1°C. After further washing with PBS, the cells were mounted with Antifade Mounting Medium (Beyotime Institute of Biotechnology, Shanghai, China). Nuclei were stained with 4′,6-diamidino-2-phenylindole (D9542; Sigma-Aldrich) as a location control. Fluorescent images were obtained using an inverted laser confocal microscope (LSM 710; Carl Zeiss Microscopy GmbH, Cologne, Germany). The results were analyzed using ZEN lite software, 2011 edition (Carl Zeiss Microscopy GmbH).
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