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22 protocols using shim pack gist c18 column

1

Analytical Characterization of Synthetic Compounds

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All commercial
chemicals and solvents were used as obtained from the manufacturer
without further purification. Flash chromatography were run on 200–300
mesh silica gel using a Teledyne CombiFlash instrument. 1H NMR spectra were recorded on a Bruker AVANCE-III spectrometer at
800 MHz. 13C NMR spectra were recorded on a Bruker AVANCE-III
spectrometer at 151 MHz. NMR chemical shifts were reported in δ
(ppm) using residual solvent peaks as standards (CDCl3–7.26
(H), 77.16 (C); CD3OD–3.31 (H), 49.00 (C); DMSO-d6–2.50 (H), 39.52 (C)). Mass spectra
were measured using an LCMS-IT-TOF (Shimadzu) mass spectrometer in
ESI mode. The purity of all final compounds (>95%) were determined
by analytical HPLC (Shim-pack GIST C18 column (250 × 4.6 mm,
particle size 5 μM); 0.05% TFA in H2O/0.05% TFA in
MeOH gradient eluting system; flow rate = 1.0 mL/min). Preparative
HPLC was conducted using Shimadzu HPLC system (Shim-pack GIST C18
column (250 × 20 mm, particle size 5 μM); H2O/MeOH gradient eluting system; flow rate = 10.0 mL/min).
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2

HPLC-MS Analysis of Anthocyanins and Stilbenes

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Anthocyanin and stilbene content analysis was performed by the method HPLC-MS as described [45 (link),47 (link),48 (link)]. Briefly, for anthocyanins 100 mg fresh cells tissue were subsequently homogenized using a mortar and a pestle in 1 mL of 1% (v/v) hydrochloric acid in methanol. Then, shredded tissue was extracted for 1 d at 4 °C. For stilbenes 100 mg of the dried shredded cells tissue were extracted for 2 h at 60 °C in 3 mL of methanol. Then, anthocyanin and stilbene extracts were filtered through a 0.25-um nylon membrane for further analysis. Next, samples were separated on Shim-pack GIST C18 column (150 mm, 2.1-nm i.d., 3-_m part size; Shimadzu, Japan) the on HPLC LC-20AD XR analytical system (Shimadzu, Japan), equipped with an SPD-M20A photodiode array detector. Liquid chromatography-high-resolution mass spectrometry for qualification of all components was performed using a 1260 Infinity analytical system (Agilent Technologies, Santa Clara, CA, USA) as described [24 (link),44 (link)].
The commercial standard cyanidin chloride, petunidin chloride, delphinidin chloride, malvidin chloride, t-resveratrol, t-piceid, t-piceatannol, ε-viniferin were obtained from Sigma-Aldrich (St. Louis, MO, USA) and used as the control.
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3

Measuring OH• Radical Formation

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The formation rate of OH radical was measured by the reduction of pCBA. The content variation of pCBA in the samples was analyzed by HPLC instrument using Shimadzu Shim-pack GIST C18 column (250 × 4.6 mm) with 5 μm particle size. The mobile phase consisted of 10 mM H2SO4 in methanol‐water‐acetonitrile solution (55:35:10 V/V). The flow rate of the mobile phase was 0.4 mL/min and the injection volume was 10 μL.
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4

UFLC-MS/MS Metabolite Profiling

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The prepared samples and standards were analysed on an UFLC system, equipped with a Shim-pack GIST C18 column (2 μm; 100 × 2.1 mm l.D) (Shimadzu, Kyoto, Japan), thermostatted at 40 °C. Chromatographic separation was achieved using a gradient elution system consisting of eluent A (MilliQ water with 0.1% formic acid) and eluent B (methanol with 0.1% formic acid) (Romil Chemistry, UK) at a constant flow rate of 0.2 mL min−1. Each metabolite class (amino acids, phytohormones, flavonoids and phenolics) had a specific elution gradient (Supplementary Table 6). The total chromatographic run time was 10, 40, 31 and 30 min; and injection volume 3, 1, 2, and 3 µL for amino acids, phytohormones, flavonoids and phenolic acids, respectively. The MRM-MS detection parameters developed and optimised (Supplementary Table 5) were then applied, and the MS conditions were as follows: nitrogen gas was used as a drying gas and a nebulising gas at flow rates of 10 L min−1 and 3 L min−1 respectively. The heating gas flow was set at 10 L min−1, interface temperature at 300 °C, interface voltage at 4 kV, DL temperature at 250 °C, and heat block temperature at 400 °C.
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5

HPLC-MS/MS Analysis of Metabolites

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For the HPLC analysis, a Shim-pack GIST C18 column (100 mm × 2.1 mm, 1.9 μm, Shimadzu, Kyoto, Japan) was adopted. The mobile-phase that contained methanol (A) and ultrapure water (B) was ultrasonically degassed prior to use. The samples were chromatographed under the following gradient conditions: 0–4 min, linear from 50% to 90% A; 4–8 min, 90% A; 8–11 min, linear from 90% to 100% A; 11–20 min 100% A; and 20–24 min, linear from 100% to 50% A; and 24–25 min, 50% A for equilibrating the column. The flow rate was 0.30 mL/min, the sample-tray temperature was maintained at 4 °C, and the sample volume was 1.0 μL.
MS was carried out on an LC-MS/MS8045 (Shimadzu, Kyoto, Japan) equipped with an ESI source manipulated in both positive-ion and negative-ion mode. The scan range for MS was varied from m/z 200 to m/z 650. Analysis was performed in PIS mode. The source parameters were shown below: DL temperature, 250 °C; heat block temperature, 400 °C; drying gas flow, 10.0 L/min; spray gas pressure, 35 psi; and capillary voltage, 4.0 kV.
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6

RNA Nucleoside Analysis by LC-MS/MS

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RNA was enzymatically digested under neutral conditions according to our previously described method (27 (link)). LC–ESI-MS/MS analysis of the digested nucleosides was performed on a Shimadzu 8045 mass spectrometer (Kyoto, Japan) equipped with an electrospray ionization (ESI) source (Turbo Ionspray) and a Shimadzu LC-30AD UPLC system (Tokyo, Japan). A Shimadzu Shim-pack GIST C18 column (100 mm × 2.1 mm i.d., 2.0 μm) was employed for the separation at 40°C. The mobile phases consist of 0.05% formic acid/H2O (solvent A) and methanol (solvent B) with a flow rate of 0.2 ml/min. A 20-min gradient (0−2 min of 5% B, 2−10 min of 5 to 80% B, 10−12 min of 80% B, 12−13 min of 80 to 5% B and 13–20 min of 5% B) was employed for the separation. The nucleosides were detected by multiple reaction monitoring (MRM) under positive-ion mode. The optimal MRM mass spectrometric parameters are listed in Supplementary Table S3 in Supporting Information.
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7

Quantifying Costunolide Loading in MSNs

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The drug loading of MSNs-COS and MSNs-COS-MAC was determined by HPLC (Nexera-i LC-2040C 3D, Shimadzu, Japan). The chromatographic conditions used in the analysis were as follows: a Shim-pack GIST C18 column (50 mm × 2.1 mm, 2 μm, Shimadzu), a mobile phase of a methanol/pH 2.0 phosphoric acid solution (70:30), a flow rate of 0.3 mL/min, a detection wavelength of 225 nm, a column temperature of 25 °C and an injection volume of 5 μL. COS in the drug-loaded samples was extracted with methanol under an ultrasonic condition and then filtered using a 0.22 μm membrane filter before running the HPLC analysis. Drug loading (%) = (Weight of costunolide in samples /Weight of samples) × 100.
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8

Quantification of Piperine in Medicinal Plants

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The piperine content was determined in TK, PN, and PR by HPLC analysis as previously reported with a slight modification [15 (link)]. The HPLC analysis was performed with a Prominence HPLC system (Shimadzu Co., Kyoto, Japan) equipped with binary pumps (LC-20AD), an auto sampler (SIL-20A HT), a column oven (CTO-20A) and a photodiode array detector (SPD-M20A). The chromatographic separation was performed on a Shimadzu Shim-pack GIST C18 column (4.6 × 250 mm, 5 μm particle size). The isocratic elution consisted of 48% of acetonitrile and 52% of 1% acetic acid in deionized water. The flow rate was 1.0 mL/min throughout the run. The column temperature was maintained at a constant temperature of 40 °C.
The standard piperine was dissolved with 50% acetonitrile in deionized water and diluted to the appropriate concentrations to establish a standard curve. The ethanolic stock solutions of TK, PN, and PR were also diluted with 50% acetonitrile in deionized water to the appropriate concentrations. Both the standard and samples were filtered through a 0.45 μm membrane filter then 10 μL of each was injected into the system. The piperine peak was detected at 341 nm.
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9

HPLC Analysis of IMB16-4 Drug Loading

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The samples were analyzed by HPLC (Nexera-i LC-2040C 3D, Shimadzu, Japan). Analysis was carried out on a Shim-pack GIST C18 column (50 × 2.1 mm, 2 μm, Shimadzu). The mobile phase consisted of an 80:20 (% v/v) mixture of methanol and pH 2.0 phosphoric acid solutions, the flow rate was 0.3 mL/min and the detection wavelength was 258 nm. The column temperature was 25 °C. The injection volume was 5 μL. The retention times are about 3.07 min for IMB16-4. The samples were filtered using a 0.22 μm membrane filter before running the HPLC analysis. Drug loading (%) = (weight of IMB16-4 in samples/weight of samples) × 100.
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10

Phytochemical Analysis of Natural Compound

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Optical rotations and UV spectra were obtained on a JASCO P-2000 polarimeter and a JASCO V-650 spectrophotometer (JASCO Corporation, Tokyo, Japan), respectively. IR spectra were acquired by KBr disc method on a Shimadzu FTIR-8400S spectrometer (Shimadzu Co. Ltd., Tokyo, Japan). 1H NMR (500 MHz), 13C NMR (125 MHz), and HMBC spectra were run on Bruker AVIII-500 spectrometer with TMS (tetramethylsilane) as the internal standard (Bruker Biospin Corporation, Fallanden, Switzerland) in CD3OD. HRESIMS were performed on an Agilent 6520 HPLC-Q-TOF mass spectrometer (Agilent Technologies, Santa Clara, CA, United States). Semi-preparative HPLC was conducted on Agilent 1200 HPLC system (Agilent Technologies, Santa Clara, CA, United States) with a YMC-Pack ODS-A column (250 mm × 10 mm, 5 μm; YMC co., Ltd., Kyoto, Japan). The LC–MS experiments were accomplished by Shimadzu LCMS-2020 (Shimadzu Co. Ltd., Tokyo, Japan) equipped with a Shim-pack GIST C18 column (100 mm × 2.1 mm, 5 μm, Shimadzu Co. Ltd., Tokyo, Japan).
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