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Imager z2 microscope

Manufactured by Zeiss
Sourced in Germany, United States, Austria

The Imager Z2 microscope is a high-performance imaging system designed for advanced microscopy applications. It features a modular design, allowing for flexible configuration to meet the specific needs of various research and industrial settings. The core function of the Imager Z2 is to provide researchers and technicians with a powerful and versatile tool for detailed observation and analysis of samples at the microscopic level.

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66 protocols using imager z2 microscope

1

Reconstructed Partial Thickness Cornea Wound Healing

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The two-layer hTECs were produced following the self-assembly approach as described previously [31 (link),35 (link),36 (link)]. Briefly, corneal fibroblasts were cultured in the presence of ascorbic acid (50 μg/mL, Sigma) for 35 days to promote the production of their own extracellular matrix. Two fibroblast sheets were then superimposed to form a reconstructed stroma, on which hLECs (P2) were seeded. Reconstructed tissues were cultured for 7 days under submerged conditions in complete DHc supplemented with ascorbate and then transferred to the air–liquid interface for 7 days in EGF-free DHc to induce epithelial differentiation. Reconstructed partial thickness corneas were then wounded using an 8 mm biopsy punch. After wounding, hTECs were placed over two additional fibroblast sheets to allow re-epithelialization over a natural extracellular matrix and culture was continued at the air–liquid interface. Wound closure was monitored macroscopically for 8 days and photographed at 24 h intervals with a Zeiss Imager Z2 microscope (Zeiss Imager.Z2 microscope (Zeiss Canada Ltd.). All experiments were conducted in quadruplicate (n = 4). The wound surface over time was measured using ImageJ software (Wayne Rasband).
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2

Chromosome 13 Telomere Identification

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XMP13 probe (D-1413, Metasystems) specific for mouse Chromosome 13 was used for chromosome identification. FISH on chromosome spread was performed according to manufacturer’s instructions. The probe was added and coverslip placed, sealed with rubber cement, denatured by heating slide at 75°C for 2 min, and incubated in humidified chamber at 37°C overnight. Slides were washed and stained with 0.5 μg/ml DAPI in VectaShield antifade medium. Digital images were captured using a CCD camera on a Zeiss Imager Z2 microscope. The coordinates of the chromosome were recorded with the venire scale along the top and side of the microscope stage. The slides were washed and performed with telomere FISH as described above. After staining with DAPI again, fluorescence from chromosomes and telomeres was digitally imaged using the same microscope according to the recorded coordinates. The telomeres of chromosome 13 were revealed by comparison of the images from the same coordinates.
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3

Doxorubicin Uptake Assay Imaging

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Cells (1 μl) from the doxorubicin uptake assay were placed into the wells of multitest slide 15 (MP Biomedicals) that were pre-coated with 1 mg/ml concanavalin A (MP Biomedicals). The slides were air dried completely and 1 μl of mounting medium with DAPI (UltraCruz) was added to each well. A cover glass was sealed onto the slide, images were taken with an epifluorescent microscope (Olympus B53 upright epifluorescent microscope equipped with an Olympus XM10 camera at 63X with Texas red filter to detect DOX or with the Zeiss Imager Z2 microscope equipped with Zeiss AxioCam MRC camera) and processed with Image J.
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4

Immunostaining of Spinal Cord Transduction

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To characterize AAV9 expression, spinal cord sections were immunostained with chicken anti-GFP (1:1000; Abcam, Cambridge, UK), goat anti-choline acetyltransferase (ChAT; 1:200, Millipore, Burlington, MA, USA) antibodies, or with chicken anti-GFP (1:1000) and mouse anti-Flag (1:500; Sigma, St. Louis, MO, USA) antibodies. The following secondary antibodies were used: Alexa Fluor 488-conjugated donkey anti-chicken IgG, Alexa Fluor 546-conjugated donkey anti-goat IgG, and Alexa Fluor 546-conjugated donkey anti-mouse IgG (all 1:1000; Thermo Fisher Scientific, Waltham, MA, USA). Images were obtained with an Imager Z2 microscope or LSM700 confocal microscope (both from Zeiss, Jena, Germany).
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5

Quantifying RPE Cell Density and Tight Junctions

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RPE flatmounts were imaged with a Zeiss Imager.Z2 microscope equipped with an Apotome2 device (Zeiss), using a Plan Neofluar 40X, 1.25 oil objective. ZO‐1‐stained samples were acquired regularly along 4 radial axes; optimally flattened areas were chosen and images from 1–2 central and 4 mid‐peripheral with respect to the optic nerve zones were done, for a total of 16–20 sampling‐fields measuring (224 × 168) μm. Each final image was generated as a projection of z‐stacks acquisitions by Zeiss software ZEN®2, which was also used to adjust brightness and contrast of the pictures. Finally, Image J was used to count RPE cells, nuclei, and quantify ZO‐1 profile. To achieve this last point a custom grid (with 20 μm‐spaced mashes) was generated and overlapped to ZO‐1 images profiling to count the number of the intersection points between the two images. Tiled images of RPEs and corresponding retinal leaflets were also obtained at low magnification and stored. Image J data were collected in an excel file and statistically analyzed with GraphPad 8.0.2.
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6

Quantitative Telomere Length Measurement

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Telomere length and function (telomere integrity and chromosome stability) was estimated by Q-FISH as described previously [21 (link), 22 (link)]. Cells were incubated with 0.3 μg/ml nocodazole for 4 h to enrich cells at metaphases. Chromosome spreads were made by a routine method. Metaphase-enriched cells were exposed to hypotonic treatment with 0.075 M KCl solution, fixed with methanol to glacial acetic acid (3:1), and spread onto clean slides. Telomeres were denatured at 80 °C for 3 min and hybridized with TelC-Cy3 probe (Panagene, F1002) at 0.5 μg/ml for 2.5 h at room temperature. Chromosomes were counter-stained with 0.5 μg/ml DAPI. Fluorescence from chromosomes and telomeres was digitally imaged on a Zeiss Imager Z2 microscope, using AxioCam and AxioVision software 4.6. For quantitative measurement of telomere length, telomere fluorescence intensity was integrated using the TFL-TELO program (a gift kindly provided by P. Lansdorp, Terry Fox Laboratory).
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7

Fluorescent In Situ Hybridization for Prokaryote Detection in Nematodes

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We performed FISH to identify the occurrence of prokaryotes on nine nematodes collected during the Momarsat, 2017 cruise. On board ship, some nematodes were fixed (see Nematode sorting and fixation). Later, at the laboratory, these specimens were hybridized with universal probes (Eurogentec, Liège, Belgium) (Table 1). Whole nematodes were rinsed in a 30 or 40% formamide-buffer. Then, they were incubated in a final volume of 30 μl of a hybridization buffer containing 30 or 40% formamide and 3 μl of each probe at 8 μM for 3.5 h at 46°C. The nematodes were then rinsed in a washing buffer for 45 min at 48°C. This step was ended by a final wash in milliQ water at room temperature for 10 min. After a quick drying period, the labeled organisms were mounted on a slide in an anti-fade mounting medium (SlowFade® Gold anti-fade reagent, Invitrogen) containing DAPI (4′,6-diamidino-2-phenylindole, dilactate), a DNA intercalary agent. Observations were made on an Imager.Z2 microscope (Zeiss, Oberkochen, Germany) equipped with a slider module Apo-Tome (Zeiss) and Colibri light technology (Zeiss) and using an AxioCam MRm (Zeiss) camera. Micrographs were analyzed using Zen (Zeiss) software.
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8

Karyotyping and FISH Imaging Protocols

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We studied at least 10 metaphases from each specimen per method. We used Ikaros karyotyping software (Metasystems, Altlussheim, Germany) to prepare karyograms from Giemsa-stained metaphases of each species. Images were captured using a Provis AX70 fluorescence microscope (Olympus, Tokyo, Japan) equipped with a DP30BW digital camera (Olympus, Tokyo, Japan) or using an Imager Z2 microscope (Zeiss, Oberkochen, Germany) equipped with a CoolCube 1 digital camera (Metasystems, Altlussheim, Germany). Photos of in situ hybridization experiments were superimposed with color and processed with DP Manager imaging software (Olympus, Tokyo, Japan) or an Isis Fluorescence Imaging System (Metasystems, Altlussheim, Germany).
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9

Immunofluorescence Detection of DNA Damage Markers

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After deposition on slides using a Cytospin centrifuge, cells were fixed with 4% paraformaldehyde, permeabilized with 0.5% Triton in phosphate-buffered saline (PBS) and saturated with 5% bovine milk in PBS. The rabbit anti-53BP1 antibody (clone NB100-304, Novus Biologicals, Cambridge, UK) and the mouse anti-γH2AX (Ser139) antibody (clone JBW301, Merck Millipore, Darmstadt, Germany) were diluted 1/300 and 1/100, respectively, in 5% bovine milk in PBS, and deposited on cytospins for 90 min at room temperature. Slides were washed twice and antibodies to rabbit or mouse immunoglobulins conjugated to alexa 488 (diluted 1/500 in 5% bovine milk in PBS) were added for 45 min at room temperature. Slides were washed and mounted with Vectashield and 1% DAPI. Images and fluorescence were captured with a ZEISS Axio Imager Z2 microscope (× 63 objective), analyzed with Metafer (version3.6, company, town state) and ImageJ software. The number of 53BP1 and γH2AX foci was counted in at least 300 nuclei.
Supplementary informations concerning methodology are included in Supplementary experiment procedures.
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10

Quantitative Pancreatic Islet Analysis

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Standard hematoxylin and eosin staining on 10 μm cryosections of islets and immunofluorescence staining of whole islets were performed to assess pancreatic islet morphology. Antibodies and their working dilutions are listed in Supplemental Table 3. Digital imaging fluorescence microscopy of the pancreas was performed using a scanning platform (MetaSystems) with an Imager Z.2 microscope (Carl Zeiss MicroImaging, Inc.). Quantitative image analysis of islet morphology was performed using ImageJ (NIH). Size of β cells size was measured by imaging randomly selected cells at 400× and determined as mean individual β cell cross-sectional area for at least 5 islets per animal using ImageJ software. For the mean individual β cell cross-sectional area, the insulin-positive area of each islet was divided by the number of nuclei within the insulin-positive area. Investigators followed a blinded protocol during analysis.
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