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17 protocols using deferoxamine mesylate dfo

1

Characterization of Isogenic Cell Lines

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HCT116, MCF7, HepG2, H1299, and Mia-PaCa2 cells were obtained from ATCC. p53−/−HCT116 cells were obtained from Vogelstein’s group [20 (link)]. All the cells in this study were used at below passage 20. All the cells and their derivatives were cultured in DMEM (Dulbecco’s modified Eagle’s medium, Invitrogen) supplemented with 10% fetal bovine serum (Gibco). H1299 cells that can inducibly express IRP1 or IRP2 under a tetracycline inducible system was previously generated [21 (link), 22 (link)]. Isogenic control and IRP2-KO p53−/−HCT116 and Mia-PaCa2 cells were previously generated [23 (link)]. Diisopropyl fluorophosphate (DFP) and Deferoxamine mesylate (DFO) were purchased from Sigma.
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2

Reagents for Oxidative Stress Assays

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Diethylenediamine pentaacetic acid (DTPA, cat# D6518), deferoxamine mesylate (DFO, cat# D9533), diethyldithiocarbamate (DETC, cat# 228680), phorbol-12-mysirate13-acetate (PMA, cat# P8139), and dimethyl sulphoxide (DMSO, cat# D2650) were purchased from Sigma-Aldrich (St. Louis, MO). 1-hydroxy-3-methoxycarbonyl-2,2,5,5-tetramethylpyrrolidine hydrochloride (CMH, cat# ALX-430–117), 1-hydroxy-3-carboxy-2,2,5,5-tetramethylpyrrolidine (CP•, cat# ALX-400–018), and 5,5-dimethyl-1-pyrroline-N-oxide (DMPO, cat# ALX-430–090) were from Enzo Life Sciences (Farmingdale, NY). Dublecco’s Modification of Eagles Medium (DMEM, cat# 10–013-CV) and phosphate buffered saline (PBS, cat# 21–031-CV) were from Corning Cellgro (Corning, NY), fetal bovine serum (FBS, cat# AM-SM-001) from Amizona (Birmingham, AL), and 10,000 units/mL penicillin and 10,000 μg/mL streptomycin (cat# 15140–122) from Thermo Fisher (Waltham, MA).
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3

Chelator Treatment of Kaolinite Mineral

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KC mineral (1 g dry clay per 20 ml, 5% [wt/vol]) was treated with cation chelator solutions (10 mM or 100 mM aqueous EDTA [Sigma] or 10 mM aqueous 2,2′-bipyridyl [BPY; Sigma] [final concentration]) or with dH2O with continuous shaking for 24 h at room temperature. To treat KC with deferoxamine (mesylate) (DFO, Sigma), a KC mineral suspension (5% [wt/vol]) was washed twice with DFO (10 mM final concentration) or dH2O with continuous shaking for 3 h at room temperature. KC particles were then washed twice with dH2O to remove remaining chelators and collected by centrifugation (25,000 rpm for 2 h), dried, ground using a mortar and pestle, and autoclaved for 1 h at 121°C.
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4

Synthesis and Characterization of Artemisinin Derivatives

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X-11, DODHA (deoxy-dihydroartemisinin), and DOX-11 (10-O-[4-(1-acetyl-5-phenyl-4,5-dihydropyrazol-3-yl) phenyl]-(10S)-deoxy-dihydroartemisinin) were synthesized as described in supp Fig. 3. DHA, acridine orange (AO), ethidium bromide (EB), N-acetylcysteine (NAC) and catalase (CAT), ferrous sulfate (Fe2+), ferric ammonium citrate (Fe3+), diphenyleneiodonium chloride (DPI) and deferoxamine mesylate (DFO) were purchased from Sigma Chemical Co. (St. Louis, MO). ABT-737 was purchased from Selleckchem (Houston, TX). 5,6-carboxy-2′,7′-dichlorodihydrofluorescein diacetate (DCFH-DA), Rhodamine-123 (Rh123) and MitoSOX™ Red were purchased from Molecular Probes (Eugene, OR). Antibodies to poly-(ADP-ribose)-polymerase (PARP), caspase-3 and caspase-8 were obtained from BD Biosciences (San Diego, CA); to Mcl-1, Bcl-2, Bcl-xL, Bax, and β-actin were from Santa Cruz Biotechology, Inc. (Santa Cruz, CA); to Bim, Bak, CHOP, FOXO3a, Puma, cleaved caspase-9 and -3 were from Cell Signaling Technology, Inc. (Beverly, MA); and to Noxa was from Abcam Inc. (Cambridge, MA).
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5

Asbestos and Carbon Nanotube Exposure Protocol

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We obtained asbestos (crocidolite, amosite and chrysotile) from the Union for International Cancer Control (UICC; Geneva, Switzerland) and suspended it in 0.9% saline (5 mg/ml). We obtained MWCNTs and suspended them in 0.5% bovine serum albumin (BSA) (5 mg/ml in saline) as described.(10 (link),11 (link)) The carbon nanotubes were distinguished as CNT-50, CNT-115, CNT-145 and CNT-tngl to represent the diameter of each nanotube (Table 1). Zymosan (Sigma-Aldrich, St. Louis, MO) and lipopolysaccharide (LPS) from E. coli 0111:B4 (Sigma-Aldrich) were used to initiate inflammation. Deferoxamine mesylate (DFO) from Sigma-Aldrich and nitrilotriacetate disodium salt from Nakalai Tesque (Kyoto, Japan) were used at a final concentration of 40 µM.
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6

Exploring Epigenetic and Signaling Modulators

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Using dimethylsulfoxide (DMSO) treated cells as controls, cells were treated with Temsirolimus (TEMS, #50-811-7, Fisher Scientific, Pittsburgh, PA) at a final concentration of 2μM, as described in our prior work (17 (link)). Likewise, as earlier described (24 (link)), 5-Azacytidine (AZA, #S1782, Selleck Chemicals, Houston, TX) was utilized at a final concentration of 1μM while Suberoylanilide hydroxamic acid (SAHA, #S1047, Selleck Chemicals, Houston, TX) was utilized at a final concentration of 50μM. Lysophosphatidic acid (LPA, as a sodium salt in chloroform, #857130C, Avanti Polar Lipids, Alabaster, AL) was utilized at a final dose of 10μM, as previously described (17 (link)). D-erythro-Sphingosine-1-Phosphate (S1P, #860492, Avanti Polar Lipids, Alabaster, AL) was utilized at a final concentration of 250nM. Deferoxamine mesylate (DFO, #D9533, Sigma-Aldrich, St. Louis, MO) was utilized at a final concentration of 10μM, as described in our earlier work (25 (link)).
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7

Monitoring Hypoxic Regulation in Breast Cancer

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A mouse breast cancer cell line (4T1) and endothelial cells (SVEC) were grown as monolayer cultures in RPMI-1640 medium supplemented with 1% antibiotic–antimycotic mix and 10% fetal bovine serum (FBS). Cells were infected by retroviruses with reporter gene vectors pCMV-luc2/miR-210 in which luciferase signals could be turned off by the binding of miR-210 to triplicates of the miR-210 binding site at the 3′ end of luc2 mRNA. Stable cell lines were selected by treatment with puromycin (2 g/mL) for 2 weeks. 4T1 cell lines with pCMV-luc2/miR-210 were labeled 4T1/miR210. Hypoxic conditions were induced with deferoxamine mesylate (DFO) (Sigma-Aldrich, St Louis, MO, USA) at 37°C in a 5% CO2 humidified environment.
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8

Oxidative Stress Assay Protocol

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DCVC was synthesized by the University of Michigan Medicinal Chemistry Core according to procedures described by McKinney et al. [24 ]. Purity (98.7%) was determined by high-performance liquid chromatography analysis and identity was confirmed by proton nuclear magnetic resonance spectroscopy. Phosphate-buffered saline (PBS), Hanks balanced salt solution (HBSS), 6-carboxy-2′,7′-dichlorodihydrofluorescein diacetate (carboxy-H2DCF-DA), Hoechst 33342 dye, and 0.25% trypsin were purchased from Invitrogen Life Technologies. Aminooxyacetic acid (AOAA), tert-butyl hydroperoxide, (±)-α-tocopherol, and deferoxamine mesylate (DFO) were purchased from Sigma-Aldrich. RPMI 1640 culture medium with l-glutamine and without phenol red, 10 000 U/ml penicillin/10 000 μg/ml streptomycin (P/S) solution and fetal bovine serum (FBS) were from Gibco. LPS from Salmonella enterica serovar Typhimurium was purchased from List Biological Laboratories, Inc. The 5,5′,6,6′-tetrachloro-1,1′,3,3′-tetraethylbenzimidazolcarbocyanine iodide (JC-1) mitochondrial membrane potential (MMP) assay was purchased as a kit from Cayman Chemical. Bongkrekic acid (BkA) was purchased from Calbiochem.
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9

Intracellular ROS Quantification in B. subtilis

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B. subtilis colonies were harvested after 24 h and sonicated at 30% amplitude for 30-60 s until homogenous. The cells suspension was then mixed with 2’,7’-dichlorodihydrofluorescin diacetate (DCFH2-DA; purity ≥97%, Sigma), a fluorogenic dye that is converted to the fluorescent DCF, at a final concentration of 100 µM and incubated in the dark for 1 h. Deferoxamine mesylate (DFO; purity ≥92.5%, Sigma) and N,N,N’,N’-Tetrakis(2-pyridylmethyl)ethylenediamine (TPEN; purity ≥97%, EMD Millipore). Cells were pellets by centrifugation at 16,200 × g for 1 min. The supernatant was collected (100 µL) and cells were resuspended in PBS before being were transferred into a 96-well plate (100 µL), and the fluorescent intensity was measured with a TECAN Spark monochromator-based (SparkControl version 3.1) with an excitation wavelength of 485 nm and emission wavelength of 535 nm, bandwidth 20.
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10

Deferoxamine and Chemotherapy in AML Mouse Model

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The sample size required for animal experiments was based on preliminary data.
For DFO treatment, daily 100mg/kg deferoxamine mesylate (DFO; Sigma) was administered I.P. from day 8 until day 22 post-transplantation of AML blasts, at which time mice were sacrificed and their BM analyzed. Control mice were injected I.P. with 100μl of PBS.
Induction chemotherapy for AML was administered when BM infiltration was over 50% by injecting 100mg/kg cytarabine (Ara-C) I.V. for 5 days and 3mg/kg doxorubicin (Doxo) for 3 days. Ara-C was co-delivered with Doxo on days 1 to 3 and alone on days 4 and 5, mimicking the 7+3 regimen used in AML patients (Wunderlich et al., 2013 (link)). Both drugs were purchased from Sellekchem, MA or obtained from the Imperial College Healthcare NHS Trust.
For EC-specific deletion of Fbxw7, tamoxifen (500 μl/mouse I.P.; Sigma) was given daily to Fbxw7lox/lox Cdh5(PAC)-CreERT2T/+ (Fbxw7iΔEC) mice and to control Fbxw7lox/lox and WT mice. In experiments where relapse and survival were analyzed, tamoxifen was given daily between day 10 and 20 post-transplantation, at which point chemotherapy was initiated. Blinding was done for the tamoxifen studies.
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