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Ft icr apex 2 spectrometer

Manufactured by Bruker
Sourced in United States

The FT-ICR APEX II spectrometer is a high-resolution mass spectrometry instrument designed for accurate mass analysis. It utilizes Fourier Transform Ion Cyclotron Resonance (FT-ICR) technology to precisely determine the mass-to-charge ratio of ionized molecules.

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5 protocols using ft icr apex 2 spectrometer

1

Synthesis and Characterization of Novel Compounds

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Unless otherwise noted, moisture sensitive reactions were conducted under dry nitrogen or argon. All chemicals and reagents were purchased from commercially available sources and used without further purification. Thin-layer chromatography (TLC): Silica gel 60 F254 plates (Merck KGaA, Darmstadt, Germany). Flash chromatography (fc): Silica gel 60, 40–64 µm (Merck). Room temperature (rt) was 21 °C. Mass spectrometry (MS): MAT GCQ (Thermo Finnigan MAT GmbH, Bremen, Germany). 1H, 13C spectra were recorded on VARIAN “MERCURY plus” (300 MHz for 1H NMR, 75 MHz for 13C NMR) and VARIAN “MERCURY plus” and BRUKER DRX-400 (400 MHz for 1H NMR, 100 MHz for 13C NMR, 377 MHz); δ in ppm related to tetramethylsilane; coupling constants (J) are given with 0.1 Hz resolution. Multiplicities of NMR signals are indicated as follows: s (singlet), d (doublet), t (triplet), m (multiplet), dd (doublet of doublets), dt (doublet of triplets). ESI/Ion trap mass spectra (LRMS) were recorded with a Bruker Esquire 3000 plus instrument (Bruker Corporation, Billerica, MA, USA). High resolution mass spectra were recorded on a FT-ICR APEX II spectrometer (Bruker Daltonics; Bruker Corporation) using electrospray ionization (ESI) in positive ion mode. Lipophilicity at pH = 7.4 (cLogD7.4) was calculated using ACD/Labs-12.5.
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2

Analytical Techniques for Compound Characterization

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All chemicals and reagents were purchased from commercial sources and used without further purification. For thin-layer chromatography (TLC), Silica gel 60 F254 plates (Merck KGaA, Darmstadt, Germany) were used. Room temperature was 21 °C. For mass spectrometry (MS), Finnigan MAT GCQ (Thermo Finnigan MAT GmbH, Bremen, Germany) was used. 1H and 13C spectra were recorded on VARIAN “MERCURY plus” (300 MHz for 1H NMR, 75 MHz for 13C NMR) and VARIAN “MERCURY plus” and BRUKER DRX-400 (400 MHz for 1H NMR, 100 MHz for 13C NMR, 377 MHz); δ in ppm related to tetramethylsilane; coupling constants (J) are given with 0.1 Hz resolution. Multiplicities of NMR signals are indicated as follows: s (singlet), d (doublet), t (triplet), m (multiplet), dd (doublet of doublets). ESI/Ion trap mass spectra (LRMS) were recorded with a Bruker Esquire 3000 plus instrument (Billerica, MA, USA). High resolution mass spectra were recorded on a FT-ICR APEX II spectrometer (Bruker Daltonics; Bruker Corporation, Billerica, MA, USA) using electrospray ionization (ESI) in positive ion mode14 (link),26 (link).
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3

NMR Spectroscopic Characterization of Organic Compounds

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Unless stated otherwise all solvents were freshly distilled under argon prior to being used. All chemicals and reagents were purchased from commercially available sources and used without further purification. 1H and 13C NMR spectra were recorded on Bruker Avance III spectrometer, at 500 MHz for proton (1H) and at 126 MHz for carbon (13C). Chemical shifts are given in parts per million (ppm) from tetramethylsilane (TMS) as internal standard in CDCl3. 2D NMR spectra (HSQC) were recorded at 500 MHz. Coupling constants (J) are reported in hertz (Hz). Unless stated otherwise, all spectra were recorded at 25 °C. High-resolution mass spectra (HRMS) were recorded on a FT-ICR APEX II spectrometer (Bruker Daltonics; Bruker Corporation, Billerica, MA, USA) using electrospray ionization in positive ion mode (ESI+). All reactions were monitored by thin-layer chromatography (TLC). Flash and dry-column flash chromatography were carried out using silica gel (10–18 or 18–32 µm, ICN-Woelm). Melting points were obtained at a heating rate of 4 °C/min, and are uncorrected. IR spectra were recorded by using a Thermo Scientific Nicolet 6700 Fourier-transform spectrometer operated in the ATR mode. Structures of all new compounds were determined by methods of 1D, 2D NMR and IR spectroscopy. Structures of the final compounds were additionally confirmed by high-resolution mass spectrometry (HRMS).
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4

Oven-dried Glassware and Dry Solvents

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Oven-dried glassware was used to carry out chemical reactions, and dry solvents under nitrogen atmosphere were employed. Solvents were purchased from Sigma Aldrich and used as such. Chemical reagents were also purchased from Sigma Aldrich and checked for integrity before using them. Direct phase flash chromatography columns were run with silica gel (240–400 mesh, Merck, Darmstadt, Germany). Reaction monitoring by thin layer chromatography (TLC) entailed Merck-precoated 60F254 plates. Reactions were monitored by TLC on silica gel, using as a direct detection method UV light at 254 nm, or by charring either with a 50% H2SO4 or with a 1% permanganate solution. 1H-NMR and 13C-NMR spectra were recorded in either CDCl3, CD3OD or DMSO-d6, depending on compounds’ solubility, on Bruker DRX-400 and Bruker DRX-300 instruments. Chemical shifts (δ) for proton and carbon signals are quoted relatively to tetramethylsilane (TMS) as an internal standard and expressed in parts per million (ppm). Electrospray ionization (ESI) mass spectrometry (MS) spectra were recorded using a Waters Micromass Q-Tof micro mass instrument, while high resolution (HR)-ESI mass spectra were recorded on an FT-ICR APEXII spectrometer (Bruker Daltonics, Billerica, MA, USA).
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5

Pd-Catalyzed Cross-Coupling Reactions

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Unless otherwise noted, moisture-sensitive reactions were conducted under dry nitrogen or argon. Pd(OAc)2, Xantphos (4,5-bis(diphenylphosphino)-9,9-dimethylxanthene), and Cs2CO3 were purchased from Sigma-Aldrich (SIGMA-ALDRICH Chemie GmbH, Schnelldorf, Germany). Other chemicals and reagents were purchased from commercial sources and were used without further purification. For thin-layer chromatography (TLC), Silica gel 60 F254 plates (Merck KGaA, Darmstadt, Germany) were used. Flash chromatography (fc) was performed using Silica gel 60, 40–64 μm (Merck). Room temperature was 21 °C. 1H, 13C, and 19F spectra were recorded on Varian “MERCURY plus 300/400” (Varian, Palo Alto, CA, USA) and Bruker Advance DRX-400 (Bruker, Billerica, MA, USA); δ in ppm related to tetramethylsilane; coupling constants (J) are given with 0.1 Hz resolution. Multiplicities of NMR signals are indicated as follows: s (singlet), d (doublet), t (triplet), q (quartet), m (multiplet), dd (doublet of doublets), ddd (doublet of doublet of doublets), td (triplet of doublets), dq (doublet of quartets) and h (hexet (sextet)). High-resolution mass spectra (HR-MS) were recorded on an FT-ICR APEX II spectrometer (Bruker Daltonics; Bruker Corporation, Billerica, MA, USA) using electrospray ionization (ESI) in positive ion mode.
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