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Anti hdac6

Manufactured by Santa Cruz Biotechnology
Sourced in United States

Anti-HDAC6 is a laboratory reagent that functions as an inhibitor of the HDAC6 enzyme. HDAC6 is a member of the histone deacetylase (HDAC) family of enzymes, which play a role in the regulation of gene expression. The Anti-HDAC6 reagent can be used in research applications to study the biological functions and effects of HDAC6 inhibition.

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14 protocols using anti hdac6

1

Dissecting Apoptosis and ER Stress Pathways

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Anti-HDAC6 (sc11420, Santa Cruz), anti- acetyl-histone H3 (9649, Cell Signaling Technology), anti-BAX (ab32503, Abcam), anti-Bcl-2 (ab3214, Abcam), anti-cleaved caspase-3 (9664, Cell Signaling Technology), anti-phospho-JNK (4668, Cell Signaling Technology), anti-JNK (ab208035, Abcam), anti-phospho-eIF2α (3398, Cell Signaling Technology), anti-eIF2α (5324, Cell Signaling Technology),anti-phospho-PERK (sc32577, Santa Cruz) anti- GRP78 (ab108613, Abcam), anti- IRE1α (ab48187, Abcam), anti-CHOP (2895, Cell Signaling Technology), anti-ATF4 (11815, Cell Signaling Technology), anti- XBP1 (ab37152, Abcam), anti-caspase-12 (ab62484, Abcam).
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2

Protein Expression Analysis by Western Blotting

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The changes in protein expression induced by the combination were evaluated using Western blotting. The cells were treated under the indicated conditions for 48 h, and whole-cell lysates were obtained using radioimmunoprecipitation assay buffer. Equal amounts of proteins were separated by 12.5% sodium dodecyl sulfate-polyacrylamide gel electrophoresis and transferred to nitrocellulose membranes. After the membranes were blocked by 5% skimmed milk, they were incubated overnight with anti-acetylated histone (Abcam, Cambridge, UK), anti-cyclin D1, anti-glucose-regulated protein 78 (GRP78), anti-HDAC1, anti-HDAC2, anti-HDAC3, anti-HDAC6 (Santa Cruz Biotechnology, Santa Cruz, CA, USA), anti-cleaved poly(ADP-ribose) polymerase (PARP), anti-endoplasmic oxidoreductin-1-like protein alpha (Ero1-Lα) (Cell Signaling Technology, Danvers, MA, USA), or anti-actin (Millipore, Billerica, MA, USA) primary antibodies. They were then incubated with horseradish-tagged secondary antibodies (Bio-Rad, Hercules, CA, USA). The bands were visualized by chemiluminescence with the ECL Plus system (GE Healthcare, Wauwatosa, WI, USA) according to the manufacturer’s instruction.
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3

Western Blot Analysis of Protein Expression

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Tissues were harvested and lysed with lysis buffer for 20 minutes on ice and the protein concentration was quantified using a BAC assay kit (Beyotime Biotech, China). Proteins were electrophoresed through a 12% sodium dodecyl sulfate polyacrylamide gel electrophoresis (SDS-PAGE) and transferred to a PVDF membrane. The membrane was incubated with anti-NAT1 (1: 200), anti-MEC-17 (1: 300), anti-Sirt2 (1: 200), and anti-HDAC6 (1: 200) antibodies (Santa Cruz, USA) overnight at 4°C. After washing, the membrane was incubated with appropriate horseradish peroxidase-conjugated secondary antibodies for one hour at room temperature. Protein bands were detected with an enhanced chemiluminescence kit.
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4

Protein Aggregation Assay with Antibodies

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The following reagents were purchased from the indicated companies: MG-132 (474790; Calbiochem, Danvers, MA, USA) and Hoechst 33258 (H-3569; Molecular Probes, Eugene, OR, USA). The following antibodies were used in this study: anti-USP10 (A300-901A; Bethyl Laboratories, Montgomery, TX, USA; HPA006731; Sigma-Aldrich, St. Louis, MO, USA), anti-ubiquitin (sc-8017; Santa Cruz Biotechnology, Santa Cruz, CA, USA), anti-p62 (PM045; MBL, Nagoya, Japan, GP62-C; PROGEN, Heidelberg, Germany), anti-G3BP1 (611127; BD Transduction Laboratories, San Jose, CA), anti-G3BP2 (A302-040; Bethyl Laboratories), anti-PABP (ab21060; Abcam, Cambridge, GB), anti-HDAC6 (sc-11420; Santa Cruz Biotechnology), anti-FLAG (M2 Monoclonal Antibody; Sigma-Aldrich), anti-GFP (sc-9996; Santa Cruz Biotechnology), anti-lamin B1 (sc-374015; Santa Cruz Biotechnology), anti-α-synuclein (S5566; Sigma-Aldrich), anti-phosphorylated α-synuclein (015-25191; FUJIFILM Wako Pure Chemical Corporation, Osaka, Japan), anti-β-actin (sc-47778; Santa Cruz Biotechnology), anti-HA (2367S; Cell Signaling, Beverly, MA, USA) and anti-α-tubulin (CP06 Oncogene Research Products, Boston, MA, USA).
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5

Protein Expression Analysis in Cell Lysates

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After treatment under the indicated conditions, cells were washed with PBS, suspended in radioimmunoprecipitation (RIPA) buffer, incubated on ice for 15 min, and centrifuged at 20380 g for 12 min. Whole cell lysate was subjected to Western blot analysis as described previously.7 To analyze the expression of ubiquitinated proteins in the detergent‐insoluble fractions (pellets obtained after the protein extraction using RIPA buffer), the pellets were washed with PBS, lysed using Extraction buffer 4 in the WSE‐7421 EzSubcell Extract kit (ATTO, Tokyo, Japan), and then subjected to Western blot analysis. The following antibodies were used: anti‐cyclin D1, anti‐cyclin‐dependent kinase (CDK) 4, anti‐glucose‐regulated protein (GRP) 78, anti‐ubiquitin, anti‐histone deacetylase (HDAC) 1, anti‐HDAC3, and anti‐HDAC6 from Santa Cruz Biotechnology (Santa Cruz, CA, USA); anti‐cleaved poly(ADP‐ribose) polymerase (PARP), anti‐HSP70, anti‐endoplasmic reticulum resident protein (ERP) 44, and anti‐endoplasmic oxidoreductin‐1‐like protein (Ero1‐L) from Cell Signaling Technology (Danvers, MA, USA); anti‐active caspase 3, anti‐NOXA, and anti‐acetylated histone from Abcam (Cambridge, UK); and anti‐actin from Millipore (Billerica, MA, USA).
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6

Western Blot Analysis of Histone Deacetylases

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RPMI culture medium was purchased from Corning (Corning, NY). Fetal bovine serum (FBS) was purchased from Sigma Chemical Co. (St. Louis, MO). Trypsin, pen/strep antibiotics, and puromycin were purchased from Gibco (Grand Island, NY). Trametinib (MEK inhibitor) was purchased from Selleckchem (Houston, TX). Antibodies for Western Blot: Anti-HDAC1 (#2062, from Cell Signaling Technology (Danvers, MA), anti-HDAC2 (#2540 CST), The anti-HDAC3 and anti-HDAC8 antibodies were described in refs. 17 (link), HDAC11(#58442, CST). Anti-HDAC6 (#H-300, sc-11420) was purchased from Santa Cruz Biotechnologies. Cleaved PARP (Asp214) (#D64E10) (#5625 CST), phospho LKB1 (#3482, CST), total LKB1 (#3050, CST). Anti-YAP1 antibody (#H00010413-M01, Abnova). Anti-Vinculin (#G8796) and anti-GAPDH (#V9131) were purchased from Millipore Sigma (Bedford, MA).
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7

Immunocytochemical Analysis of Twist1-GFP

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Cells grown on coverslips were transfected with Twist1-GFP deletion construct and immunostained at desired time points using specific antibodies as mentioned below. Transfected cells were fixed in 3.7% formaldehyde (15 min), washed with PBS, permeabilized with 0.2% Triton X-100 in PBS (5 min) and then blocked with 3% BSA in PBS for at least 30 min at RT. The cells were washed once and specific primary antibodies [anti-Vimentin (Santa Cruz, Cat # SC-6260), anti-HDAC6 (Santa Cruz, Cat # SC-28386), and anti-γ tubulin (Sigma, Cat # T6557)] were added in a freshly prepared 0.5% BSA in PBS (1:500) and incubated for 2 h at RT. Following seven PBS washes, the secondary antibodies conjugated to Alexa Fluor 555 (Invitrogen, Cat # A-21422) were added (1:1000 in PBS) to the cells and incubation continued for 1 h at RT in dark. Finally, the cells were washed ten times with PBS and stained with DAPI. Finally, the coverslips were mounted on glass slide using mounting media Mowiol-DABCO and images were captured at different magnifications using Nikon TiS. Fluorescence pictures were merged using Image J software.
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8

Fluorescent Labeling of Cytoskeletal Proteins

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Primary antibodies used were as follows: anti-GM130 (1:4000, BD Biosciences), anti-AnkG (1:2000, Abcam), anti-HDAC6 (1:1000, Santa Cruz Biotechnology and Cell Signaling Technology), anti-cortactin (1:3000, Merck), anti-acetyl cortactin (1:1000, Merck), anti-Goat anti-mouse IgG Alexa Fluor 594-labeled secondary antibody (1:4000, Thermo Fisher Scientific), and Goat anti-mouse IgG Alexa Fluor 488-labeled secondary antibody (1:4000, Thermo Fisher Scientific).
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9

HDAC6 Inhibition Impacts Cellular Dynamics

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Reagents used were as follows: apicidin, tubastatin A, and doxycycline were from Sigma. Puromycin was from InvivoGen. Scramble or HDAC6 siRNA were purchased from Dharmacon. Antibodies used were as follows: Anti-PSME4 was from Abcam. Anti-YAP1, anti-HDAC6, anti-acetylated-tubulin, and anti-GAPDH were from Santa Cruz Biotechnology. Anti-actin, anti-tubulin, and anti-flag were from Sigma. Alexa Fluor 568-conjugated goat anti-mouse IgG was from Molecular Probes (Invitrogen).
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10

Antibody and Reagent Specification Protocol

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Antibodies used were as follows: anti-YAP1, anti-phosphor-YAP1 (S127), and anti-acetyl-lysine were from Cell Signaling Technology (Danvers, MA, USA). Anti-PSME4, anti-histone H3, and anti-HDAC2 were from Abcam (Cambridge, UK). Anti-14-3-3 epsilon was from Thermo Fisher Scientific (Waltham, MA, USA). Anti-HSP90, anti-HDAC6, anti-acetylated-tubulin, and anti-GAPDH were from Santa Cruz Biotechnology (Dalla, CA, USA). Anti-actin, anti-tubulin, anti-HA, and anti-flag were from Sigma (St. Louis, MO, USA). Alexa Fluor 568-conjugated goat anti-mouse IgG was from Molecular Probes (Invitrogen, Waltham, MA, USA).
Reagents used were as follows: apicidin, cycloheximide, chloroquine, actinomycin D, leptomycin B, nicotinamide, tubastatin A, and doxycycline were from Sigma (St. Louis, MO, USA). MG132 was purchased from Cayman (Ann Arbor, MI, USA). Puromycin and blasticidin were from InvivoGen (San Diego, CA, USA).
siRNAs targeting HDAC6, FBXW7, SOCS6, and PSME4 were purchased from Dharmacon (Lafayette, CO, USA). Scramble siRNA was purchased from Bioneer (Daejeon, Korea).
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