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31 protocols using recombinant mouse il 3

1

Multicolor Flow Cytometry of IgE Receptors

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FITC- and PE-labelled anti-human CD123 (Clone 6H6), CD63 (clone H5C6), PerCP-HLA-Dr (Clone L243), PE- and Alexa 647-labeled or unlabeled anti-human FcεRIα (clone AER-37), PE-CD203c and APC-CD203c (clone NP4D6), anti-mouse CD117 (c-kit) (clone 2B8) were purchased from Biolegend (San Diego, CA). Polyclonal anti-human IgE Ab (PAE) derived from goat (Ab9159) was purchased from Abcam (Cambridge, MA). AP-labeled anti-human IgM, IgG, IgA and IgE, and anti-mouse IgG were obtained from KPL (Gaithersburg, MD), recombinant mouse IL-3 from Peprotech (Rocky Hill, NJ) and the natural cat allergen Fel d1, peanut allergen Ara h1, Ara h2 and Ara h6 from Indoor biotechnologies (Charlottesville, VA). The pre-screened peanut and cat allergic plasmas were purchased from PlasmaLab international, Inc (Everett, WA). Anti-human IgE mAbs were produced with standard hybridoma technology (27 (link)), and purified with protein A and protein L (GenScript USA, Piscataway, NJ) affinity chromatography.
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2

Mast Cell Degranulation Assay

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BMDMC culture was established as described elsewhere29 (link). In brief, bone marrow cells were flushed from adult WT mice femurs and tibia, centrifuged and resuspended in RPMI containing 10% fetal bovine serum (FBS), 100 U/mL penicillin, 0.1 mg/mL streptomycin, 25 mmom/L HEPES, 2 mmol/L L-glutamine, 1 mmol/L sodium pyruvate, 1 mmol/L nonessential amino acids, and 1 mmol/L MEM amino acids (all from Sigma) in the presence of 5 ng/ml recombinant mouse IL-3 (Peprotech). A selection process for mature mast cells was for a period of at least 4 weeks with continuous enrichment for non-adherent fraction of mast cell precursors. After this period, cells were phenotypically more than 90% mature as assessed by FACS staining with antibodies against mouse FcεR1-PE (eBioscience, clone MAR-1) and CD117(c-Kit)-APC (eBioscience, clone 2B8; Online Figure I). To induce mast cells degranulation, cells were sensitized overnight with 100 ng/ml mouse anti-DNP-IgE (Sigma), washed and stimulated with 100 ng/ml DNP-HSA (Sigma) for 0.5 or 1 h (fast release) or 6 h (slow release). The efficiency of mediator release was monitored by β-hexaminidase activity in mast cell supernatants (releasates; Online Figure I)30 .
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3

Mouse Bone Marrow FDC-P1 Cell Culture and Irradiation

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Mouse bone marrow FDC-P1 cells were purchased from the American Type Culture Collection (ATCC). FDC-P1 cells were cultured in RPMI1640 supplemented with 10% fetal bovine serum (FBS) and 0.5 ng/mL recombinant mouse IL-3 (Peprotech, No.213-13) at 37 °C with 5% CO2. DIDS sodium salt (MedChemExpress, No.67483-13-0) was reconstituted in sterile water at 500 mM of stock solution and used at 100 μM. DMSO was used to dissolve the powder of RU. 521 (MedChemExpress, No. HY-114180), and the concentration of mother liquor was 20 mM. The solution was frozen at −80 °C and diluted to 10 nM when used. At room temperature, cell cultures were irradiated with cobalt-60 γ-rays with the dose rate of 80.74 cGy/min [53 (link)].
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4

Establishment of Genotype-specific Cell Lines

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Non-adherent cells were harvested from each genotype mouse LTBMC at week 4 and cultured in six-well tissue culture plates in Iscove's Modified Eagles Medium (IMDM) supplemented with 20% fetal calf serum (FBS) and 1.0 ng/mL recombinant mouse IL-3 (Peprotech, Rocky Hill, NJ). The cell lines were passaged weekly for 12–14 weeks to establish primary IL-3-dependent cell lines using published methods [9 (link)].
Clonal cell sub-lines were established from each of the genotype parent cell lines by expansion of single cell derived colonies. Cells were then replated in methylcellulose, colonies selected at 14 days, and cultured as above, to establish subclonal lines [9 (link)]. Confirmation of genotype after repeated subcloning was carried out for each cell line.
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5

Mast Cell Activation Signaling

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Reagents used in this study were acquired from the indicated suppliers: SR9009 (Merck Millipore, Burlington, MA, USA); SR9011, GSK4112, LPS, and Evans blue (Sigma-Aldrich, St. Louis, MO, USA); recombinant mouse IL-3 (PeproTech, Rocky Hill, NJ, USA); recombinant mouse IL-33 (R & D Systems, Minneapolis, MN, USA); anti-TNP IgE, anti-DNP mouse IgE mAb, anti-mouse CD16/32, PE-conjugated anti-mouse c-kit Ab, and APC-conjugated anti-mouse ST2 Ab (BD Bioscience, San Jose, CA, USA); DNP-BSA (Cosmo Bio, Tokyo, Japan); APC-conjugated anti-mouse CD63 Ab, FITC-conjugated anti-mouse FcεRIα (BioLegend, San Diego, CA, USA); anti-phospho-NF-κB p65 Ab (Ser536; #3033), anti-phospho-p38 MAPK Ab (Thr180/Thy182; #4511), anti-phospho-Gab2 Ab (Tyr452; #3882), anti-phosph-PI3 Kinase p85 (Tyr458)/p55 (Tur199) Ab (#4228), and anti-β-actin Ab (#4970) (Cell Signaling Technology, Danvers, MA, USA).
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6

Generation of Leukemia Mouse Models

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Bone marrow cells from constitutive or inducible knockout mice (for a list of genetic mouse models used in this study see Supplementary Table 4) were harvested and cultured in Iscove’s modified Dulbecco’s medium (IMDM, Invitrogen, Carlsbad, CA) with GlutaMAX containing 20% fetal bovine serum, 50 μM 2-mercaptoethanol, 100 IU/ml penicillin, 100 μg/ml streptomycin in the presence of cytokines. For pre-B cell culture, bone marrow cells were cultured in IMDM with 10 ng/ml recombinant mouse IL-7 (Peprotech, Rocky Hill, NJ) on OP9 stroma cells. For ALL leukemia model, pre-B cells were retrovirally transduced by BCR-ABL1. ALL cells generated from inducible knockout mice were retrovirally transduced with ERT2 or Cre ERT2 virus, and puromycin selection was performed. 4-OHT was used to induce Cre mediated gene deletion. For CML-like leukemia model, the myeloid-restricted protocol described previously was used23 (link), which generates CML-like cells. Briefly, bone marrow cells were cultured in IMDM with recombinant mouse IL-3 (10 ng/ml), IL-6 (25 ng/ml), SCF (50 ng/ml, PeproTech, Rocky Hill, NJ) and then transformed by BCR-ABL1 retroviurs. Cytokines were removed after BCR-ABL1 transduction.
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7

Isolation and Culture of Mouse Bone Marrow-Derived Mast Cells

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Bone marrow-derived mast cells were cultured from femoral marrow cells of C57Bl/6 mice (Jackson Laboratories, Bar Harbor, ME). Bone marrow from 2 mice were used for each batch of mast cells. Cells were cultured in RPMI 1640 medium supplemented with 10% FBS, 100 U/ml penicillin, 100 μg/ml streptomycin, 100 μg/ml Primocin (Invivogen, San Diego, CA), 25 mM HEPES, 1.0 mM sodium pyruvate, nonessential amino acids (BioSource International, Camarillo, CA), 0.0035% 2-ME and 300 ng/ml recombinant mouse IL-3 (PeproTech, Rocky Hill, NJ). Mast cells were used following 4–6 weeks of culture at 37°C and 5% CO2. All animal procedures were conducted in accordance with the National Institutes of Health guidelines and approved by the University of Colorado Denver Institutional Animal Care and Use Committee. All animals were treated humanely and with regard for alleviation of suffering. Cytotoxicity of AgNPs at concentrations used in this study were evaluated by MTS and LDH assays (Promega, Madison WI) and did not induce cytotoxicity compared to the control group (data not shown). Further these concentrations were based on the evaluation of other nanoparticles which have utilized similar concentrations as performed by the NIEHS Nano GO Consortium (Xia et al., 2013 (link)).
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8

Murine Myeloid Cell Culture Protocols

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C57BL/6 mice were maintained under pathogen-free conditions in IVC cages. Animal experiments were approved by the animal experimentation review board of the canton of Bern (BE31/11 and BE12/14).
RPMI-1640 AQmedia, propidium iodide (PI) and Eukitt were purchased from Sigma-Aldrich Chemie GmbH (Buchs, Switzerland). Fetal calf serum (FCS, Sera Pro, ultra-low endotoxin) was purchased from Pan Biotech (Aidenbach, Germany). 2-mercaptoethanol (2-ME), 4-hydroxytamoxifen (4-OHT), and penicillin/streptomycin were from Life Technologies (Carlsbad, CA, USA). WEHI-3B cell-conditioned medium was used as a source of mouse interleukin-3 and was produced as previously described.27 (link), 50 (link) Recombinant mouse IL-3 was purchased from Peprotech (London, UK). Q-VD-OPh was purchased from SM Biochemicals (Anaheim, CA, USA). Recombinant His6-tagged GFP-Annexin V was purified in-house as previously described.51 (link), 52 (link) Pancoll human (density 1.077 g/ml) was purchased from Pan Biotech, while EasySep Human Basophil Enrichment Kit was bought from StemCell Technologies (Vancouver, Canada). ABT-199 (Venetoclax) was manufactured by BioVision (Milpitas, CA, USA), ABT-263 (Navitoclax) and A-1210477 by Selleck Chemicals (Houston, TX, USA), while WEHI-539 hydrochloride was purchased from Hycultec (Beutelsbach, Germany).
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9

Adoptive Transfer of Mast Cells in Mice

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The preparation of bone marrow derived mast cells was done as previously described (Kalesnikoff and Galli, 2011 (link)). The purity of MCs was >90% based on toluidine blue staining and surface expression of CD117 and FcεRI. For adoptive transfer of mast cells in KitW-sh/W-sh mice, wild type (WT) mast cells were obtained after a 4–5 week culture of bone marrow cells in medium containing 20 ng/ml recombinant mouse IL-3 (Peprotech). For MC-reconstitution studies, bone marrow derived mast cells were adoptively transferred via subcutaneous injection of 106 cells into eight sites in the shaved dorsal skin of 6–8 wk KitW-sh/W-sh mice. After 6 weeks, skin was collected for analysis of EDC gene expression.
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10

Generation of Leukemia Mouse Models

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Bone marrow cells from constitutive or inducible knockout mice (for a list of genetic mouse models used in this study see Supplementary Table 4) were harvested and cultured in Iscove’s modified Dulbecco’s medium (IMDM, Invitrogen, Carlsbad, CA) with GlutaMAX containing 20% fetal bovine serum, 50 μM 2-mercaptoethanol, 100 IU/ml penicillin, 100 μg/ml streptomycin in the presence of cytokines. For pre-B cell culture, bone marrow cells were cultured in IMDM with 10 ng/ml recombinant mouse IL-7 (Peprotech, Rocky Hill, NJ) on OP9 stroma cells. For ALL leukemia model, pre-B cells were retrovirally transduced by BCR-ABL1. ALL cells generated from inducible knockout mice were retrovirally transduced with ERT2 or Cre ERT2 virus, and puromycin selection was performed. 4-OHT was used to induce Cre mediated gene deletion. For CML-like leukemia model, the myeloid-restricted protocol described previously was used23 (link), which generates CML-like cells. Briefly, bone marrow cells were cultured in IMDM with recombinant mouse IL-3 (10 ng/ml), IL-6 (25 ng/ml), SCF (50 ng/ml, PeproTech, Rocky Hill, NJ) and then transformed by BCR-ABL1 retroviurs. Cytokines were removed after BCR-ABL1 transduction.
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