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Abi 3730xl

Manufactured by Tsingke
Sourced in China

The ABI 3730XL is a capillary electrophoresis instrument designed for DNA sequencing applications. It provides high-throughput and reliable DNA analysis capabilities. The core function of the ABI 3730XL is to perform automated DNA sequencing using the Sanger sequencing method.

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2 protocols using abi 3730xl

1

Mitochondrial Gene Sequencing for Identification

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Three mitochondrial protein-coding genes (COI, COII, and CytB) were utilized as molecular markers in the present study. Based on the published mitochondrial genome sequence of A. mali (Sun et al., 2020 (link)), we designed specific primers for the amplification of complete COI, COII, and CytB sequences using the software Primer Premier version 5 (Lalitha, 2000 (link)). Details of the primer sequences and product sizes are provided in Supplementary Table S1.
Polymerase Chain Reaction (PCR) amplification was conducted in a total volume of 25 μl containing 1.5 μl genomic DNA, 1 μl each of forward and reverse primers (10 μmol/L), 12.5 μl 2× Flash PCR MasterMix (CWBIO, China), and 9 μl ddH2O. PCR amplification was performed with an initial denaturation at 98°C for 1 min; 35 cycles of 10 s at 94°C, 15 s at a primer-specific annealing temperature (46°C for COI, 49°C for COII, and 53°C for CytB), and extension at 72°C for 30 s; and a final elongation at 72°C for 1 min. The PCR products were visualized on 1.0% agarose gels under UV light. The sequencing reaction was carried out using an ABI BigDye Terminator version 3.1 cycle sequencing kit on an ABI 3730XL (Tsingke Biotechnology Co., Ltd., Beijing, China) for Sanger sequencing in both directions.
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2

HCV NS5B Gene Sequencing and Genotyping

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The HCV NS5B gene PCR products were detected using 1.0% agarose gel electrophoresis under UV illumination, purified using a DNA purification kit, and sequenced by Tsingke Biological Technology Co. on an ABI 3730XL automated DNA sequencer. Sequencing date were aligned using Clustal version 1.8.1 and then processed by BioEdit version 7.1.5 software. HCV NS5B sequences were genotyped after alignment with reference sequences from the GenBank (available at: http://www.ncbi.nlm.nih.gov/genbank/) according to co-analyses with a total of 111 reference sequences of 1a, 1b, 2a, 3a, 3b, 6a, 6b, 6c, 6d, 6e, 6f, 6g, 6h, 6i, 6j, 6k, 6l, 6m, 6n, 6o, 6p, 6q, 6r, 6s, 6t, 6u, 6v and 6w subtypes. Under the GTR+G+I (general time reversible + gamma distribution + invariant sites) model, Maximum-likelihood (ML) tree was constructed using MEGA version 6.0.6, with bootstrap values estimated as 1000 replications.
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