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7 protocols using si 60

1

NMR, IR, MS, and HPLC Characterization

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1H and 13C NMR spectra were recorded in deuterochloroform at ambient temperature using a Varian VNMRS-600 instrument. Chemical shift values are quoted in parts per million and J values in Hertz. IR spectra were recorded on a Perkin-Elmer 1600 series FT-IR spectrometer. Mass spectra were obtained on a Finnigan MAT Model 8200 spectrometer. UV spectra were taken on a Shimadzu Model 160A UV-VIS spectrophotometer in the solvents indicated. Column flash chromatography was performed on silica gel Si 60 (230–400 mesh, Merck, Darmstadt, Germany). Reactions were monitored by thin-layer chromatography (TLC) performed using Merck Kieselgel 60 F254 plates. The TLC plates were visualized with a combination of UV light and an aqueous solution of cerium (IV)/phosphomolybdenic acid at a high temperature. The analytical and preparative separations of HPLC were performed using a Knauer Model 64 instrument with Eurospher 100 C18 column (40 × 250 mm). All moisture-sensitive reactions were performed in flame-dried glassware under argon.
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2

General Synthetic Protocol Characterization

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All available
chemicals and solvents
were purchased from commercial sources and were used without any further
purification. Thin-layer chromatography (TLC) was performed using
0.25 mm silica gel precoated plates Si 60-F254 (Merck, Darmstadt,
Germany) visualized by UV-254 light and cerium ammonium molybdate
(CAM) staining. Purification by flash column chromatography (FCC)
was conducted by using silica gel Si 60, 230–400 mesh, 0.040–0.063
mm (Merck). Melting points were determined on a Stuart Scientific
SMP3 and are corrected. 1H and 13C NMR spectra
were recorded on a Bruker Avance 400 (400 and 101 MHz, respectively);
chemical shifts are indicated in parts per million downfield from
SiMe4, using the residual proton (CHCl3 = 7.27
ppm) and carbon (CDCl3 = 77.0 ppm) solvent resonances as
an internal reference. Coupling constant values J are given in Hz. High-resolution mass spectra (HRMS) were recorded
using a mass spectrometer MicroTOF from Bruker with an electron spray
ion source (ESI) and a TOF detector or using a mass spectrometer from
Thermo Fisher Scientific with an electron spray ion source (ESI) and
a LTQ Orbitrap as a detector. FTIR spectra were recorded on a Tensor
27 (ATR Diamond) Bruker infrared spectrophotometer and are reported
in frequency of absorption (cm–1).
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3

Synthesis of Organic Compounds

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All reactions were performed open to air and without precautions to exclude air/moisture unless specified otherwise. Reagents and solvents were purchased from commercial sources and used without further purification unless specified otherwise. NMR spectra were recorded on Bruker AVIII HD 400, NEO 400, AVIII HD 500 and AVII 500 spectrometers. Chemical shifts (δ) are quoted in parts per million (ppm). 1H and 13C NMR spectra are referenced to residual protons in chloroform-d (δH = 7.26, δC = 77.16) and acetone-d6H = 2.05, δC = 28.95). Peak multiplicities are defined as s (singlet), d (doublet), t (triplet), q (quartet), m (multiplet) and br (broad). Coupling constants (J) are reported to the nearest 0.1 Hz. High-resolution mass spectra (HRMS) were recorded on a Thermo Scientific exactive mass spectrometer (Waters Equity autosampler and pump) for electrospray ionisation (ESI). Flash chromatography refers to normal phase column chromatography on silica gel (Merck Si 60, 0.040–0.063 mm) under a positive pressure of nitrogen.
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4

HPLC Analysis of Tocopherols in Muffins

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Fat extracted from muffins (200 mg) was dissolved in n-hexane, and diluted up to 10 mL. Tocopherols were qualitatively and quantitatively identified using a Waters HPLC system consisting of a pump (Waters 600), a fluorimetric detector (Waters 474), an autosampler (Waters 2707), a column oven (Waters Jetstream 2 Plus), and a LiChrosorb Si 60 column (250 × 4.6 mm, 5 μm) by Merck (Darmstadt, Germany). The mobile phase was a mixture of n-hexane with 1,4-dioxane (96:4, v/v). The excitation and emission wavelengths were 295 and 330 nm, respectively for the fluorescence detection of tocopherols [18 (link)].
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5

Biotransformation of Genistein by Streptomyces

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Substrates (10 mg) dissolved in 200 μl DMSO were fed to 2-day old Streptomyces sp. MBT76 culture broth. This biotransformation period lasted for another 3 days. The control experiment included both negative control of feeding 200 μl DMSO solvent to MBT76, and positive control of 10 mg substrates dissolved in 200 μl DMSO added to sterile culture media. Each experiment was done in triplicate. The method used to harvest the biotransformation products was as described for the metabolomics study.
To isolate the biotransformation products of genistein (Sigma), the combined mixture in 50 ml methanol was first defatted twice with 20 ml of n-hexane, which was subsequently fractionated by Sephadex LH-20 chromatography (GE Healthcare Life Sciences, Eindhoven, The Netherlands) eluting with methanol, to give seven fractions fr1–7. These fractions were subjected to NMR profiling to discard fr1–3, and fr6 that gave no isoflavone signals. Fr7 was purified by silica gel (pore size 60 Å, 70–230 mesh, St. Louis, MO, USA) to yield compound 15 (0.7 mg). Fr4 was separated by preparative TLC on a silica gel plate (Si60, Merck, Darmstadt, Germany), migrated with solvent system of CHCl3-MeOH (20:3) to give pure compound 16 (0.5 mg) and semi-pure compound 18 (0.2 mg). Fr5 was purified by preparative TLC to give pure compound 17 (0.3 mg) using the same TLC conditions.
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6

Organic Synthesis Using Commercial Chemicals

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All available chemicals and solvents were purchased from commercial sources and were used without any further purification. Thin layer chromatography (TLC) was performed using 0.25 mm silica gel precoated plates Si 60‐F254 (Merck, Darmstadt, Germany) visualized by UV‐254 light and CAM staining. Purification by flash column chromatography (FCC) was conducted by using silica gel Si 60, 230–400 mesh, 0.040–0.063 mm (Merck). Melting points were determined on a Stuart Scientific SMP3 and are corrected. 1H and 13C NMR spectra were recorded on a Bruker Avance 400 (400 and 101 MHz, respectively) or Bruker Fourier 300 (300 and 75 MHz, respectively); chemical shifts are indicated in parts per million downfield from SiMe4, using the residual proton (CHCl3=7.26 ppm; DMSO=2.54 ppm) and carbon (CDCl3=77.0; ppm; DMSO=40.0 ppm) solvent resonances as internal reference. Protons and carbon assignments were achieved by 13C‐APT, 1H‐1H COSY, and 1H‐13C heteronuclear correlation experiments. Coupling constants values J are given in Hz.
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7

Isolation and Characterization of Compounds 12 and 13

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Based on UHPLC-MS results, VPPR_B_2017 underground parts were selected for semi-preparative purposes. The total amount of 12.875 g of underground parts was macerated three times with 70% methanol in water in the ratio 1:10. Combined extracts were diluted with water and applied to SPE. The fraction eluted with 70% to 85% methanol was concentrated to dryness in vacuo in 40 °C (Rotavapor V-100; Büchi, Flavil, Swiss), giving 346 mg (2.7% of initial dry mass). The first separation was performed by FC on 85 g of Si60 (Merck, Darmstadt, Germany), with chloroform→methanol gradient at flow rate 5 mL/min. Further, selected fractions were purified by semi-preparative HPLC on RP-18 in 75% methanol (isocratically) with a flow of 3 mL/min. As a result, 36.1 mg of 13 and 40.8 mg of 12 were obtained, corresponding to 0.28% and 0.32% of starting dry mass. To assure, that no artifacts were collected, 12 and 13 were confronted with primary extract by UHPLC-MS (conditions as described in Section 4.5).
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