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Ne per extraction reagent kit

Manufactured by Thermo Fisher Scientific

The NE-PER Extraction Reagent Kit is a product offered by Thermo Fisher Scientific. It is designed for the extraction and preparation of nuclear and cytoplasmic protein fractions from mammalian cells or tissues. The kit provides the necessary reagents and protocols to perform this extraction process.

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2 protocols using ne per extraction reagent kit

1

Oxidative Stress-Induced DNA Damage in C. sinensis

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Adult C. sinensis worms exposed to various stressful conditions, including GSH deficiency by BSO + BCNU treatment (200 μM per sample), excess by GSH-OEt supplementation (2 mM), and inhibition of GSTO functions by gliotoxin treatment (100 μM), were incubated in the presence or absence of CHP (8 mM) for 1 h at 37 °C in a 5% CO2 incubator. DNAs from each conditioned worm were extracted using the DNeasy Blood and Tissue Kit (catalog No. 69504, Qiagen), eluted in 50 μL elution buffer, and quantified at 260 nm in a NanoDrop spectrophotometer (ThermoFisher). Degradation of respective DNAs was examined by 1% agarose gel electrophoresis with ethidium bromide staining.
To evaluate the protective role of CsGSTOs against oxidative-stress-induced DNA damage, we extracted nuclear fraction of live worms treated with 8 mM CHP for 1 h at 37 °C using NE-PER Extraction Reagent Kit (ThermoFisher). The nuclear fraction (200 μg per sample) was incubated with different dilutions (from 1:2000 to 1:16,000 in PBS) of antibodies specific to rCsGSTO1 and/or 2 for 5 min at 37 °C. The reaction mixture was then coincubated with genomic DNA (50 μg per sample) separately isolated from oxidatively injured worms for 5 min at 37 °C. DNA degradation under each condition was analyzed by 1% agarose gel electrophoresis and ethidium bromide staining.
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2

Oxidative Stress Response Assay in Parasitic Worms

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Freshly isolated adult worms were stabilized for 1 h at 37 °C in serum- and phenol-red-free RPMI medium (catalog No. 11835030, ThermoFisher, Waltham, MA, USA) under 5% CO2 atmosphere. The groups of 10 worms in 1 mL fresh medium were treated with the indicated doses of cumene hydroperoxide (CHP; catalog No. 513296, Sigma-Aldrich; 1–8 mM for 1 h or 4 mM for 0–1 h), buthionine sulfoximine (BSO; catalog No. B2515, Sigma-Aldrich) plus 1,3-bis(2-chloroethyl)-1-nitrosourea (BCNU; catalog No. C0400, Sigma-Aldrich) (200 μM each per condition for 1 h), GSH-reduced ethyl ester (GSH-OEt; catalog No. G1404, Sigma-Aldrich; 2 mM for 1 h), and gliotoxin (catalog No. G9893, Sigma-Aldrich; 10–100 μM for 10 min–1 h) at 37 °C. Experimental worms were harvested and separated into nuclear and cytosolic fractions using the NE-PER Extraction Reagent Kit (catalog No. 78835, ThermoFisher) according to the manufacturer’s instructions. Proteins from each compartment were extracted in PBS (100 mM, pH 7.4) containing a protease inhibitor cocktail (1 tablet/25 mL). Nuclear and cytosolic fractions obtained from worms incubated without chemical treatment were used as controls.
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