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Ampigene qpcr green mix

Manufactured by Enzo Life Sciences
Sourced in United States

The AMPIGENE qPCR Green Mix is a ready-to-use solution for quantitative PCR (qPCR) analysis. It contains all the necessary components, including a DNA polymerase, buffer, and a fluorescent dye, to perform real-time PCR amplification and detection.

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12 protocols using ampigene qpcr green mix

1

Gene Expression Analysis by qPCR

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Total RNA was extracted from each group using an RNeasy Mini Kit (QIAGEN, Hilden, Germany) following the manufacturer’s protocol. One microgram of extracted RNA was used for reverse transcription with a cDNA synthesis kit (Bioneer, Daejeon, Korea). The expression levels of target genes were analyzed using AMPIGENE® qPCR Green Mix (Enzo, San Diego, CA, USA) on a CFX96™ real-time PCR detection system (Bio-Rad, Hercules, CA, USA). Samples were denatured at 95 °C for 5 min, followed by 40 cycles at 95 °C for 5 s for denaturation and 60 °C for 5 s for annealing/extension. Relative gene expression was calculated as fold change using the 2−ΔΔCt method [19 (link)]. The primer sequences of targeted genes used for this study are presented in Table 1.
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2

RNA Isolation and qRT-PCR for Gene Expression

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RNA was isolated using RNA isoplus (Takara, Mountain View, CA, USA; #9109) and reverse-transcribed using 5X All-in-One RT Master Mix (ABM, #G492). qRT-PCR was performed using AMPIGENE qPCR Green Mix (Enzo Life Sciences, #ENZ-NUC104-1000). The qRT-PCR primer sequences used in this study are listed in Supplementary Table S1 and glyceraldehyde-3-phosphate dehydrogenase (Gapdh) was used as an endogenous control. For miRNA detection, reverse transcription was performed using miScript II RT Kit (Qiagen, Venlo, The Netherlands; #218160) and qRT-PCR was performed using miScript SYBR Green PCR Kit (Qiagen, #218073) and Rnu6 was used as endogenous control. The expression levels were analyzed using StepOnePlus (ThermoFisher Scientific).
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3

Quantification of gene expression

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Total RNA was extracted from cells using Trizol reagent (Invitrogen), according to the manufacturers’ instruction. One micrograms of total RNA were used to determine the expression of mRNAs using AMPIGENE® qPCR Green Mix (Enzo Biochem, Inc., New York, NY, USA) and iCycler real-time PCR detection system (Bio-Rad, CA) according to the manufacturers’ instruction. The sequences of the primers were as follows: FGF2, 5′-AGAAGAGCGACCCTCACATCA-3′ (forward) and 5′-CGGTTAGCACACACTCCTTTG-3′ (reverse); IL-6, 5′-ACTCACCTCTTCAGAACGAATTG-3′ (forward) and 5′-CCATCTTTGGAAGGTTCAGGTTG-3′ (reverse); TGFB2, 5′-CAGCACACTCGATATGGACCA-3′ (forward) and 5′-CCTCGGGCTCAGGATAGTCT-3′ (reverse); VEGFA, 5′-AGGGCAGAATCATCACGAAGT-3′ (forward) and 5′-AGGGTCTCGATTGGATGGCA-3′ (reverse); β-actin, 5′-ACCGAGCGCGGCTACAG-3′ (forward) and 5′-CTTAATGTCACGCACGATTTCC-3′. β-actin was used for the normalization of mRNA.
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4

Quantitative RT-PCR Analysis of HDF mRNA

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The mRNA of the HDFs was extracted by using TRIzol™ (Invitrogen, CA, USA) according to the manufacturer’s protocol. The mRNA sample (1 mg) was reverse transcribed to cDNA by using amfiRivert cDNA Synthesis Platinum master Mix (GenDEPOT, Barker, TX, USA). Relative gene expression was analyzed with the 7500 Real-Time PCR system (Applied Biosystems, Foster City, CA, USA). Reaction mixture with each primer (Bioneer, Daejeon, Korea) and AMPIGENE® qPCR Green Mix (Enzo Life Sciences, Farmingdale, NY, USA) were applied to 40 cycles of RT-PCR (95 °C for 15 s, 60 °C for 60 s, and 95 °C for 10 min). The relative gene expression against the GAPDH gene was evaluated based on the comparative or ΔΔCt method. Table 1 lists the primer sequences used in this study.
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5

Quantifying Immune Signaling Pathways

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The mRNAs of the spleen, kidney, and lymph nodes were extracted using the FavorPrep Tissue Total RNA Purification Mini Kit (Favorgen Biotech Corporation, Pingtung, Taiwan) according to the manufacturer’s protocol. The mRNA isolated from each tissue was synthesized using the AMPIGENE cDNA Synthesis Kit (Enzo Life Sciences, Inc., Farmingdale, NY, USA) according to the manufacturer's instructions. The synthesized cDNA was subjected to a real-time polymerase reaction using AMPIGENE qPCR Green Mix (Enzo Life Sciences, Inc.). Real-time PCR was performed 35 times and included initialization at 95°C for 5 minutes, denaturation at 95°C for 30 seconds, annealing at 60°C for 1 minute, and extension at 72°C for 30 seconds. mRNA expression levels of TLR7, TLR9, and downstream signaling proteins were measured.
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6

Quantitative Gene Expression Analysis

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Reverse-transcribed using 5X All‐in‐One RT Master Mix (ABM, No. G492). Quantitative real‐time polymerase chain reaction (qRT‐PCR) was performed using AMPIGENE qPCR Green Mix (Enzo Life Sciences, No. ENZ‐NUC104‐1000). RN18S was used as an endogenous control. The qRT-PCR primer sequences used in this study are listed in Supplementary Table S1.
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7

RNA Extraction and qRT-PCR Analysis

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JBP muscle cells were collected at passages of P6 to P10. Total RNAs were extracted from these cells using an AccuZol Total RNA extraction kit (Bioneer, Daejeon, Korea). Quantity and purity of RNAs were determined using a spectrophotometer (μDrop plate, Thermo Fisher Scientific, USA). One microgram of total RNA was reverse-transcribed to cDNA with a cDNA synthesis kit (Bioneer, Korea). Quantitative real-time polymerase chain reaction (qRT-PCR) assays were performed using 1 μL of cDNA and 19 μL of stock solution containing AMPIGENE qPCR Green Mix (Enzo, San Diego, CA, USA), UltraPure distilled water (Invitrogen, USA), and primer solution containing both sense and antisense custom-designed primers on a CFX96 real-time PCR detection system (Bio-Rad, USA). Samples were denatured at 95°C for 5 minutes and cycled 40 times at 95°C (for denaturing) for 5 seconds and 60°C (for annealing and extension) for 30 seconds. Gene-specific primer sequences are listed in Table 1. The qRT-PCR results were normalized against GAPDH as a housekeeping gene to calculate the expression of each target gene.
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8

Quantitative Analysis of Muscle Differentiation

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Cells were collected and stored at −80°C. Total mRNA was isolated
using RNeasy Mini kit (Qiagen, Valencia, CA, USA), according to
manufacturer’s instructions. Total mRNA concentrations were quantified
using a Nanodrop spectrometer (Thermo Fisher Scientific, San Jose, CA, USA). The
cDNA synthesis was performed using a cDNA synthesis kit (Bioneer, Daejeon,
Korea). A primer, 1 μl of cDNA, and AMPIGENE® qPCR Green Mix
(Enzo, San Diego, CA, USA) were prepared to a total volume of 20 μL,
following the manufacturer’s protocol. Primer sequences of
GAPDH, PAX7, MYOD1, and
MYOG are listed in Table
1
. Real-time quantitative PCR was performed using a CFX96TM Real-Time
PCR detection system (Bio-Rad) in triplicate. All data were normalized with
GAPDH and calculated using the
2-ΔΔCT method [26 (link)].
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9

qRT-PCR for Gene Expression Analysis

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qRT‐PCR was performed using AMPIGENE qPCR Green Mix (Enzo Life Sciences, #ENZ‐NUC104‐1000). RN18S was used as an endogenous control. The qRT-PCR primer sequences used in this study are listed in Supplementary Table 1.
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10

Quantitative Analysis of Psoriasis Biomarkers

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The mRNA expression levels of S100A8 (signature gene of psoriasis) and PD-L1 in the lesional and non-lesional skin superficial tissues of 11 patients with CPP were analyzed using qRT-PCR. Total RNA was extracted using the total RNA Mini kit (Favogen, Pingtung, Taiwan). The RNA (1 μg) was reverse transcribed into complementary DNA using a RevertAid first-strand cDNA synthesis kit (Thermo Scientific). The qRT-PCR analysis was performed using LightCycler® 480II with AMPIGENE qPCR Green Mix (Enzo Life Sciences, Farmingdale, NY). The PCR conditions were as follows: 95 °C for 5 min (initial denaturation), followed by 45 cycles of 95 °C for 10 s, 60 °C for 10 s, and 72 °C for 10 s. The primer sets used in the qRT-PCR analysis are listed in the Supplementary Materials (Table S1).
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