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9 protocols using cool snapfx

1

Microtubule Network Visualization in U-87 MG Cells

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U-87 MG cells were seeded (10 000
cells per well, 300 μL)
on eight-well chamber slides (Lab-Tek). After 24 h, the medium was
removed, and the cells were treated with FONPs–PTX (181 or
362 μg/mL of FONPs–PTX corresponding to 5 or 10 μM
PTX-equivalent concentration in FONPs–PTX) for 24 h. After
drug treatment, immunofluorescence staining of the microtubular network
was performed using anti-β-tubulin primary antibody (1:200,
mouse monoclonal, Sigma-Aldrich) and FITC-conjugated secondary antibody
(1:200, Sigma-Aldrich) as previously described.9 (link) To double-label nuclei, cells were further stained with
4,6-diamino-2-phenylindole (DAPI) (0.25 μg/mL). Cells were observed
with an epifluorescence microscope (Leica DM-IRBE), 40× objective
lens, coupled to a digital camera (Coolsnap FX, Princeton Instruments).
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2

Visualizing Microtubule Network Dynamics

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U87-MG cells were seeded for 24 hours before NP or drug incubation on eight-well Chamber Slides (Lab-Tek®; Thermo Fisher Scientific, Waltham, MA, USA). After Au-NPw or paclitaxel treatment for 6 hours, immunofluorescence staining of the microtubule network was performed using anti-α-tubulin primary antibody (1:400, mouse monoclonal; Sigma-Aldrich) and Alexa Fluor® 488-conjugated secondary antibody (1:20; Cell Signaling Technology, Beverly, MA, USA) as previously described.45 (link) To double-label nuclei, cells were further stained with 4,6-diamidino-2-phenylindole (0.25 μg/mL; Sigma-Aldrich). Cells were observed using an epifluorescence microscope (Leica DM-IRBE; Wetzlar, Germany), 60× objective lens, coupled to a digital camera (Cool-SNAP FX; Princeton Instruments, Trenton, NJ, USA).
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3

Microtubule Dynamics Quantification

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Time-lapse acquisitions for microtubule dynamics experiments (wtEB1-GFP, T166A-GFP and S155A-GFP U87-MG cells) were performed with a Leica DM-IRBE equipped with a 60X / NA 1.49 objective lens. Thirty-one images per cell were acquired at 2-s intervals using a digital camera (CCD camera Coolsnap FX; Princeton Instruments). Analysis of microtubule dynamics was performed using the manual tracking personalized plug-in for Image J software. Position of EB1 comets was detected by thresholding a filtered image and the centroids of individual comets were followed over time. Changes in length exceeding 0.067 µm were considered as growth events. Catastrophe frequency was calculated for each individual comet tracked, and corresponds to the inverse of the total length of growth. Decoration time was calculated by dividing EB1 comet length by microtubule growth rate. At least 30 microtubules were analyzed for each experimental condition.
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4

Imaging and Analyzing Microtubule Dynamics

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Cells were grown on collagen‐coated glass coverslips (35 mm, Ibidi GmbH) for 48 hours then stimulated for 20 minutes with HGF (0.5 nM) and observed with an inverted microscope Axiovert 200 M (Carl Zeiss, Inc.), and ×100 plan Apochromat NA 1.4 objective, AxioCam HRM (Carl Zeiss, Inc.). Thirty‐one images per cell were acquired at 4 seconds intervals using a digital camera (charge‐coupled device Coolsnap FX (Princeton Instruments); Coolsnap HQ (Roper Scientific). Plus‐ends of individual MTs were tracked in time using MetaMorph software (MDS Analytical Technologies). The number of catastrophes (transition from growth or pause to shortening) and rescues (transitions from shortening to pause or growth) was calculated as described previously40 from 30 MTs in three independent experiments. Means and (±) SE of the mean (SEM) are shown.
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5

Measuring Intracellular Calcium Dynamics

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Isolated cells were preloaded with a standard external solution containing 2 μM Fura-2/AM (Invitrogen, Oregon, USA) for 40 min at 37°C. Ca2+ images were captured using an inverted fluorescence microscope (Olympus IX70, Japan) and a silicon intensifier target camera (Cool SNAPfx, Roper Scientific), and recorded on a fluorescence-imaging system (LAMBAD 10-2, Sutter Instrument Co, USA). For measurement of [Ca2+]i with Fura-2, the excitation wavelengths were 340 nm and 380 nm, a dichroic mirror of 440 nm and an emission filter of 510 nm were used. [Ca2+]i was calculated from the ratio (R) of the two fluorescence intensities, F340/F380 [22 (link)]. The change in [Ca2+]i was calculated by subtracting [Ca2+]i at the peak response level from that at the pre-stimulated level.
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6

Immunofluorescence Staining of Cells

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Cells grown on glass coverslips were washed with PBS, fixed with 4% paraformaldehyde or with methanol for gp74 staining, blocked, and permeabilized with PBTG buffer (0.1% Triton X-100, 1% bovine serum albumin [BSA], and 1M glycine in PBS) for 15 min at room temperature. Samples were incubated with primary antibodies diluted in 1% BSA in PBS for 1 h at room temperature, washed with PBS, and incubated with fluorescently labeled secondary antibodies for 30 min at room temperature, as described (García-Briones et al., 2006 (link)). After washing with PBS, nuclei were stained with 1 μg of DAPI (4′,6′-diamidino-2-phenylindole; Invitrogen)/ml or with To-Pro-3 (Molecular Probes). Samples were mounted in Fluoromount G (Southern Biotech) and observed with an Axioskop microscope (Zeiss) coupled to a digital monochrome camera coolsnap FX (Roper Scientific). Images were acquired by using RS Image 1.9.2 software (Roper Scientific) and processed using Adobe Photoshop CS2 (Adobe Systems, Inc.). For confocal laser scanning microscopy, samples were observed using a Leica TCS SPE confocal lases scanning microscope. Images were acquired using Leica Advanced Fluorescence Software and processed with Adobe Photoshop CS2 (Adobe Systems, Inc.). Optical slice thickness for all confocal images displayed was of 1 airy unit.
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7

Quantifying Apoptotic Cells Exposed to Camptothecin

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Cells were subjected to apoptotic stress by incubating with camptothecin (CPT) (20 μM, 37 °C, 0–8.5 h) as described previously24 (link). Hoechst 33258 (10 ng/ml) was added to the culture medium for 10 min at 37 °C. All images were collected using a Nikon TE2000 fluorescence inverted microscope equipped with a CoolSnap FX charge-coupled device camera (Roper Scientific, Trenton, NJ, USA) and MetaMorph image analysis software 4.01 (Universal Imaging, Dowington, PA, USA). Apoptotic cells were quantified using Guava easyCyte by flow cytometer as described before25 (link). Confocal images were obtained using the Olympus Fluoview FV1200 Laser scanning confocal Microscope using a 60X NA1.35 objective.
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8

Multimodal Optical Imaging of Tissue

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Multimodal optical imaging was performed as described in detail previously (Dunn et al., 2003 (link); Dunn et al., 2005 (link)). Light for multispectral reflectance imaging was provided by a tungsten halogen fiber-optic bundle (Techniquip R150; Capra Optical, Natick, MA, USA). Before illuminating the sample, light was guided through a filter wheel with six 10-nm-wide bandpass filters (560 to 610 nm) and the diffuse reflectance images were captured by a second CCD camera (Coolsnap fx; Roper Scientific, Tucson, AZ, USA; 1,300 × 1,030 pixels with 3 × 3 binning, resulting in 434 × 343 image size for multispectral reflectance). The illumination light for both imaging modalities was delivered to the sample with an oblique angle, collected by a variable magnification objective ( × 0.75 to × 3; Edmund Optics, Barrington, NJ, USA), split by a dichroic mirror, and acquired simultaneously by CCD cameras for combined multispectral and laser speckle imaging. The final multispectral imaging field was positioned over the right hemisphere (~7 × 6 mm2). The data were subsequently interpolated to the common time base using the recorded filter wheel angular positions and exposure times of both cameras.
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9

Imaging C. elegans on Ir4 and Na2S2O3/GSH Media

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C. elegans was cultured as previously described [36] and maintained at 20 °C. Ir4 or Na2S2O3/GSH were added to normal growth media (NMG) liquid at 50°C, poured into Petri dishes (60 mm) and allowed to cool until solidified.
Prepared media were seeded with the normal food source of E. coli and incubated overnight at room temperature to dry. Adult C. elegans animals were added to the Na2S2O3/GSH loaded media and allowed to feed freely overnight.
They were then fed with Ir4 loaded media prior to imaging. Animals were transferred and imaged on 10% agarose pads in the presence of 2.5% (w/v) polystyrene beads (50 nm) to prevent movement. Imaging employed on a monochromatic Cool SNAP FX camera (Roper Scientific, USA) and analyzed by using Axio Vision 4.2 software (Carl Zeiss).
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