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Alexa 647 conjugated goat anti rat igg

Manufactured by Thermo Fisher Scientific
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Alexa Fluor 647-conjugated goat anti-rat IgG is a secondary antibody used to detect and visualize rat immunoglobulin G (IgG) in various immunoassays and imaging applications. It is a fluorescent-labeled antibody that specifically binds to rat IgG molecules, allowing for the detection and localization of target antigens.

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8 protocols using alexa 647 conjugated goat anti rat igg

1

FHR-B Binding and Complement Activation on Necrotic Cells

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To investigate FHR-B binding and complement activation on necrotic cells, necrosis of Jurkat T cells and A20 murine B cells was induced by heating at 65°C for 30 min. Necrotic Jurkat T cells were incubated with 20 µg/mL FHR-B for 30 min at 37°C. Binding was measured by flow cytometry using rat anti-mouse FH antibody (5C2) and Alexa647-conjugated goat anti-rat IgG (Invitrogen, Thermo Fisher Scientific, Waltham, MA, USA). A total of 10,000 cells was measured using a FACSCalibur flow cytometer (BD Biosciences, Heidelberg, Germany) and data were analyzed using FlowJo software (TreeStar, Ashland, OR, USA). To measure complement activation, necrotic cells were incubated with 20% mouse serum with or without 20 µg/mL FHR-B in RPMI-1640 medium containing 10% FCS. After 30 min at 37°C, the cells were washed with DPBS and labeled with FITC-conjugated anti-mouse C3. Cells were gated based on morphology and staining with propidium iodide. Data were collected and analyzed using a FACSCalibur instrument and the FlowJo Software.
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2

Immunofluorescence Staining of Tissue Sections

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For immunofluorescence staining of tissues, 10 μm cryosections were equilibrated at RT, fixed in PFA for 15 min, permeabilized using PBS containing 0.2% Triton-X for 10 min, and blocked in PBS containing 0.05% Tween-20, 5% FBS, 5% BSA, and 5% goat serum (GE Healthcare, UK) for 1 h. The sections were immunostained with rabbit anti-fluorescein (cat. no. A889, Thermo Fisher Scientific, MA, USA), rat anti-mouse CD31, biotin rat anti-mouse CD11b (cat. no. 553370; 557395, BD Biosciences, CA, USA), rat anti-mouse LYVE-1 (cat. no. 14044382, eBioscience, CA, USA), rabbit polyclonal anti-Ki67 (cat. no. NB500–170, Novusbio, UK), and rabbit anti-Cleaved Caspase-3 (Asp 175),(cat. no. 966, Cell Signaling Technology, Inc., MA, USA) as primary antibodies,. Alexa 488-conjugated goat anti-rabbit IgG, Alexa 647-conjugated goat anti-rat IgG, Alexa 546-conjugated goat anti-rabbit IgG (all Invitrogen, Thermo Fisher Scientific, MA, USA) and strepta- vidin Dylight® 550 (Thermo Fisher Scientific, MA, USA) were used as secondary antibodies. Nuclei were counterstained with 10 pg/ml DAPI. The stained tissue sections were examined by fluorescence confocal microscopy using Olympus FV1200MPE instrument, and the images were processed and analyzed using the FV10-ASW 4.2 Viewer image software (Olympus, Germany) and Image J freeware.
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3

Immunofluorescence Staining of p32 in 4T1 and MCF10CA1a Cells

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4T1 and MCF10CA1a cells (104) were seeded on glass coverslip in a 24 well-plate and incubated overnight at 37°C. The cells were blocked in PBS containing 0.05% Tween-20, 5% FBS, 5% BSA, and 5% goat serum (GE Healthcare, UK) for 1 h. The cells were immunostained with 10μg/mL of the in-house generated rabbit polyclonal p32 antibody in buffer containing 1% of BSA, 1% FBS, and 1% of goat serum in PBS at room temperature for 1 h. The cells were washed, and incubated with Alexa 647-conjugated goat anti-rat IgG (1/2000, Invitrogen, Thermo Fisher Scientific, MA, USA) in blocking buffer at room temperature for 30 min. Cells were counterstained with 1 μg/mL of DAPI, transferred to glass slides, and examined by fluorescence confocal microscopy using the Zeiss LSM710 instrument.
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4

Fluorescent Imaging of Tumor-Associated Cells

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Balb/c mice were orthotopically injected with 1 million of 4T1 cells in the mammary gland and after 3 days FAM-LinTT1-PS (1mg of polymer, 100μL) was intravenously injected. After 24 h, the animals were sacrificed and the tumor and organs were excised, fixed in 4% of paraformaldehyde, cryoprotected with 15% and 30% sucrose, frozen down with liquid nitrogen, and cryosectioned at 10 μm. Tissue sections were permeabilized using PBS 10 mM containing 0.2% Triton-X for 10 min, and blocked in PBS 10mM containing 0.05% Tween-20, 5% FBS, 5% BSA, and 5% goat serum (GE Healthcare, UK) for 1 h. The sections were immunostained at dilution 1/100 with anti-fluorescein rabbit IgG fraction (Thermo Fisher Scientific, MA, USA), rat anti-mouse CD31, biotin rat anti-mouse CD11b, (BD Biosciences, CA, USA), rat anti-mouse CD68, rat anti-mouse CD206 (Bio-Rad, USA), and anti-p32 rabbit polyclonal antibody (Millipore, Germany) as primary antibodies. As secondary antibodies, Alexa 488-conjugated goat anti-rabbit IgG and Alexa 647-conjugated goat anti-rat IgG (1/500, Invitrogen, Thermo Fisher Scientific, MA, USA) were used. The sections were counterstained with DAPI and examined by fluorescence confocal microscopy using Olympus FV1200MPE instrument. The images were processed and analyzed using the FV10-ASW 4.2 Viewer image software (Olympus, Germany) and the Image J software.
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5

Immunostaining of Cryosectioned Tumor Tissues

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The excised tumors and organs were cryosectioned at 10 μm, fixed
with 4% of paraformaldehyde in PBS, and immunostained with rabbit
anti-fluorescein (Life Technologies, USA) and rat anti-mouse CD31 (BD
Biosciences, USA) as primary antibodies, and with Alexa 488-conjugated goat
anti-rabbit IgG and Alexa 647-conjugated goat anti-rat IgG (Invitrogen, USA) as
secondary antibodies. Alternatively, the tissue sections were immunostained with
rabbit anti-NRP-1 (Abcam, UK) or rabbit anti-αv-integrin (Millipore, US)
followed by Alexa 647-conjugated goat anti-rabbit IgG (Invitrogen, USA). The
nuclei of cells were stained with 10 μg/ml DAPI. Confocal images of the
tissue sections were analyzed with the ZEN lite 2012 image software.
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6

Visualizing Vascular Endothelial Cadherin and Actin in Retinas

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VE-cadherin in whole-mounted retinas was visualized as previously described 24 (link). Briefly, enucleated eyes were fixed with 4% paraformaldehyde for 45 min at room temperature and then with acetone for 3 min at -20°C. The fixed retinas were permeabilized for 4 h with 1.0% Triton X-100 in PBS and incubated with a monoclonal VE-cadherin antibody (1:200; BD Pharmingen, San Diego, CA, USA). The retinas were then probed with Alexa 647-conjugated goat anti-rat IgG (1:300; Invitrogen), and VE-cadherin in the superficial vessels of the retinas was visualized by confocal microscopy.
Actin filaments in whole-mounted retinas were determined as previously described 24 (link). Briefly, enucleated eyeballs were fixed with 4% paraformaldehyde overnight at 4°C. Following dissection in a tri-lobe configuration, the retinas were permeabilized with 1.0% Triton X-100 in PBS for 4 h and incubated with Alexa Fluor 488 phalloidin (1:200; Molecular Probes, Eugene, OR) for 2 h at room temperature. The superficial vessels in the stained whole-mounted retinas were visualized by confocal microscopy.
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7

Cell Surface p32 Expression Analysis

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4T1 and MCF10CA1a cells were detached from the culture plate with enzyme-free cell dissociation buffer (Gibco, Life Technologies, UK). The cells (105 cells) were incubated with 10μg/mL of the in-house generated rabbit polyclonal p32 antibody in blocking buffer containing 1% of BSA, 1% FBS, and 1% of goat serum in PBS at room temperature for 1 h. The cells were washed, and incubated with Alexa 647-conjugated goat anti-rat IgG (1/1000, Invitrogen, Thermo Fisher Scientific, MA, USA) in blocking buffer at room temperature for 30 min. After washes, the cell surface p32 expression was analyzed by flow cytometry (Accuri, BD Biosciences, CA, USA).
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8

Multicolor Immunostaining of Cryosections

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Cryosections (10 μm) on Superfrost Plus slides were equilibrated at RT, fixed in cold methanol, washed in PBS and blocked in PBS containing 0.05% Tween-20, 5% FBS, 5% BSA, and 5% goat serum (GE Healthcare, UK) for 1 h. The sections were immunostained with rabbit anti-fluorescein (cat #A889, Thermo Fisher Scientific, MA, USA), rat anti-mouse CD31 (cat #553371, BD Pharmingen, USA), rat anti-mouse CD68 (cat #MCA1957GA, AbD Serotec, USA), rat anti-mouse CD206 (cat #MCA2235GA, Bio-Rad, USA), rat antimouse LYVE-1 (cat #14-0443, Affymetrix, USA), and rabbit anti-cleaved caspase-3 (cat #966, Cell Signaling Technology, USA) as primary antibodies. Alexa 488-conjugated goat anti-rabbit IgG, Alexa 647conjugated goat anti-rat IgG, Alexa 546-conjugated goat anti-rabbit IgG (all Invitrogen, Thermo Fisher Scientific, USA) were used as secondary antibodies. To detect endogenous IgG as a marker of blood vessel leakiness, we stained to tissue sections with Alexa 546 goat anti-mouse IgG, (#Cat.No: A11003; Invitrogen, Thermo Fisher Scientific, USA) at 1/400 dilution. Nuclei were counterstained with 1 μg/ml DAPI. The tissue sections were examined by Olympus FV1200MPE confocal microscope (Olympus, Germany), and the images were processed and analyzed using the FV10-ASW 4.2 Viewer image software (Olympus, Germany) and Image J freeware.
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