The largest database of trusted experimental protocols

Dapi reagent

Manufactured by Thermo Fisher Scientific
Sourced in United States

DAPI (4',6-diamidino-2-phenylindole) is a fluorescent stain that binds strongly to adenine-thymine (A-T) rich regions in DNA. It is commonly used in fluorescence microscopy to visualize and analyze cell nuclei.

Automatically generated - may contain errors

24 protocols using dapi reagent

1

Immunofluorescence Staining of TRPV4 in OCT

Check if the same lab product or an alternative is used in the 5 most similar protocols
The samples in OCT were cut into 30 μm sections on a cryostat microtome (MEV, SLEE Medical GMBH, Mainz, Germany) and then the sections were thaw-mounted on positively charged covered glass slides (18 × 18 mm, Citogtest scientific, Haimen, China). Immunofluorescence staining was performed according to the protocol. In brief, before staining, the sections were rinsed with phosphate-buffered saline (PBS) and processed with goat blocking serum (10%, 50 μL) (Solarbio life sciences, Beijing, China) for 1 h (room temperature). Then, the slides were incubated with TPRV4 primary antibody (1:500, 50 μL) (cat # ab94868, Abcam, Cambridge, UK) overnight (4 °C). After washing with PBS, the slides were incubated in the corresponding secondary antibodies (1:500, 50 μL) (cat # ab150081, Abcam, Cambridge, UK) for 1 h (room temperature). Subsequently, the slides were counter-stained with DAPI reagent (Thermo Fisher Scientific, Waltham, MA, USA) for 10 min (room temperature) and then washed again. Finally, the sections were sealed by anti-fluorescence quencher (Biosharp, Hefei, China) and examined under a fluorescence microscope (Axio Obesever Z1, Zeiss, Oberkochen, Germany).
+ Open protocol
+ Expand
2

EdU Incorporation Assay for Proliferation

Check if the same lab product or an alternative is used in the 5 most similar protocols
1 × 10−6 m of 5‐ethynyl‐2′‐deoxyuridine (EdU) was added to each well of the wound healing assay. Cells were incubated for 24 h in a humidified incubator (37 °C, 5% CO2), and then fixed with 4% paraformaldehyde for 20 min at RT. The Click‐iT EdU (ThermoFisher Scientific) reaction was performed according to the manufacturer's instructions to reveal EdU positive nuclei. Nuclei were counterstained with DAPI reagent (ThermoFisher Scientific) in a 1:2000 dilution in DPBS. HUVEC were further stained for CD31 marker, as previously described. Fluorescence images were acquired from five randomly selected fields per well using an inverted fluorescence microscope (DMI6000, Leica Microsystems GmbH, Wetzlar, Germany). EdU positive nuclei were presented as a percentage of total DAPI positive nuclei. Nuclei count was performed with Fiji software,[98] and encompassed a minimum of 1000 DAPI‐positive nuclei per condition.
+ Open protocol
+ Expand
3

Cellular Uptake of Nanocomplexes Assessment

Check if the same lab product or an alternative is used in the 5 most similar protocols
To determine the uptake of nanocomplexes into cells, we adopted fluorescence microscope and flow cytometry to assess the fluorescence intensity. In brief, MDA-MB-231 cells were placed in a confocal dish (105 cells) and cultured 24 hours. Then, the cy5 labeled siRNA (cy5-siRNA) as control, and the complexes of cy5-siRNA packaged by GO-PEI-PEG or GO-PEI-PEG-CPP were added. After incubation for 24 hours, the cells were fixed in 4% paraformaldehyde and stained with a DAPI reagent (0.5 g/mL, Thermo). The fluorescence of cy5 was observed and captured under 633 nm exciter by a microscope (Carl Zeiss, Germany). For flow cytometry, the cells were treated with indicated nanocomplexes for 24 hours, collected, suspended in PBS (107/mL), and the fluorescence intensity was evaluated by the flow cytometer (BD Biosciences, USA) under excitation of 633 nm.
+ Open protocol
+ Expand
4

Cardiomyocyte Apoptosis Assessment

Check if the same lab product or an alternative is used in the 5 most similar protocols
The transfected primary cardiomyocytes were inoculated in a 12-well plate, and the cell density was controlled to about 70%. Subsequently, the primary cardiomyocytes were treated differently. After 8 hours, the cardiomyocytes were washed with precooled phosphate buffered saline (PBS) solution 2 times, 5 minutes each; 4% paraformaldehyde was used to fix the cardiomyocytes for 20 minutes; and the cardiomyocytes were incubated with 0.5% Triton X-100 (Sinopharm Chemical Reagent, Shanghai, China) at room temperature for 10 minutes. After washing the cardiomyocytes with PBS 3 times, each well was incubated with TUNEL reagent (Gene, Shanghai, China) at 37°C for 1 hour. After washing the cardiomyocytes with PBS, the nucleus was stained with DAPI reagent, and the positive cells were observed under an inverted fluorescence microscope (Thermo Fisher Scientific, Waltham, MA, USA). ImageJ software was used to exclude false positives and count EdU positive cells.
+ Open protocol
+ Expand
5

Immunofluorescence Analysis of Penile Tissues

Check if the same lab product or an alternative is used in the 5 most similar protocols
The penile tissues were soaked in 4% paraformaldehyde for fixation and then transferred to 30% sucrose in PBS for dehydration overnight. The samples were embedded and cut into 5 μm sections before mounting on glass slides. After immersion and blocking for 1 h, the slides were incubated with primary antibodies against α-smooth muscle actin (α-SMA, 1 : 1000; Abcam) and endothelial nitric oxide synthase (eNOS; 1 : 50; Abcam). Next, the slides were washed and incubated with Alexa Fluor-594-conjugated secondary antibodies (Invitrogen, Carlsbad, CA, USA). The nuclei were stained with DAPI reagent (Thermo Fisher, MA, USA) for 5 min. Finally, the slides were examined under a fluorescence microscope (Leica, Heidelberg, Germany).
+ Open protocol
+ Expand
6

Quantifying hiPSC-CM Proliferation

Check if the same lab product or an alternative is used in the 5 most similar protocols
hiPSC‐CM at day 15 of differentiation were seeded at a density of 100 000 cell cm−2 in 48‐ and 96‐well plates. 24 h later, cells were treated with EV samples at a dose of 300 particles per cell (time‐point 0 h). 1 × 10−6 m of EdU was added to each well. Cells were incubated either for 24 or 48 h in a humidified incubator (37 °C, 5% CO2) and counted by trypan blue exclusion assay. Cells were fixed with 4% paraformaldehyde for 20 min at RT, washed three times with DPBS, permeabilized and blocked with blocking buffer (3% bovine serum albumin, 0.05% Triton X‐100) for 30 min at RT. The Click‐iT EdU (ThermoFisher Scientific) reaction was performed according to the manufacturer's instructions to reveal EdU positive nuclei. For immunostaining, corresponding antibodies were diluted at the desired concentration in blocking buffer [cTnT, 1:200, MS‐295‐PI, Thermo Fisher Scientific; phH3: 1:200, Phospho‐Histone H3 (Ser10) (D7N8E) XP(R) rabbit mAb, 53348S, Cell Signaling Technologies] and incubated with cells overnight at 4 °C. Next day, cells were washed three times with DPBS, and incubated with the appropriate secondary antibody diluted in blocking buffer for 1 h. Nuclei were counterstained with DAPI reagent (ThermoFisher Scientific) in a 1:2000 dilution in DPBS.
+ Open protocol
+ Expand
7

Immunofluorescent Staining of E-cadherin

Check if the same lab product or an alternative is used in the 5 most similar protocols
The 4 μM sections were obtained using a cryostat microtome (Leica, Wetzlar, Germany) and placed onto glass slides. The paraffin sections underwent two rounds of dewaxing in xylene, followed by gradient alcohol treatment (100%, 90%, 80%, 70%) for 3 mins each. The sections were then washed with PBS and repaired with acid antigen repair solution at 100˚C for 10 mins. The sections were treated with 10% goat serum at room temperature for 1 hour, then incubated with E-cadherin (Abmart, Berkeley Heights, NJ, USA) diluted in 1:100 for overnight at 4˚C. Subsequently, the slices were incubated with Alexa Fluor 488 coupled goat anti-mouse IgG (ThermoFisher) diluted in 1:1000 and Sporo-Glo diluted in 1:50 at room temperature for 1 hour. The slides were rinsed with PBS and then treated with the Slowfade Gold anti-fading agent containing DAPI reagent (ThermoFisher) to the cover glass. The stained slides were examined under a Zeiss Axioskop Mot 2 fluorescence microscope (Carl Zeiss, Oberkochen, Germany). The images were processed using ZEN microscopy software (Carl Zeiss, Oberkochen, Germany).
+ Open protocol
+ Expand
8

Investigating Antiviral Effects of T-705

Check if the same lab product or an alternative is used in the 5 most similar protocols
To investigate the virus inhibition effect, virus titers and fluorescent spots were determined in T-705 treated cells. The N2a cells were seeded in 24-well cell culture plates at 5 × 104 cells/mL overnight. Then, cells were infected with VSV-GFP at MOI of 0.01 at 37 °C for 1 h. After being washed, cells were inoculated with gradient dilutions of T-705 at concentrations of 0.094 to 3 μg/mL at 37 °C for 48 h. The supernatant was collected and determined by virus titration to analyze the differences in virus titers post T-705 treatment.
The changes in fluorescent spots reflect the viral spread efficacy between cells. Similarly, N2a cells were seeded in 12-well cell culture plates at 1×105 cells/mL overnight. Cells were infected with VSV-GFP at MOI of 0.01 at 37 °C for 1 h. Subsequently, cells were washed and fixed in a medium containing 1 × DMEM, 0.7% low-melting-point agarose, 2%FBS, and T-705 at 3 μg/mL at 37 °C for 48 h. Then, the agarose was removed, and the cells were stained by a DAPI reagent (Thermo Fisher, Waltham, MA, USA) to be visualized by a fluorescence microscope.
+ Open protocol
+ Expand
9

Immunofluorescence Microscopy of Cells

Check if the same lab product or an alternative is used in the 5 most similar protocols
6 × 104 cells per condition were incubated on poly-L-lysine coated Hendley-Essex 12 well glass microscope slides for 1 h before being fixed in 4% formaldehyde in PBS. The cells were permeabilized in 0.5% Triton-X-100 PBS followed by 2 h of blocking in 5% BSA, 0.2% Triton-X-100 TBS. Primary antibody was applied overnight in a humidified chamber at 4 °C. Appropriate secondary antibody (1:500 dilution) was applied for further 1 h incubation at room temperature after removal of a primary antibody using PBS 0.1% Tween 20. Antifade mountant with DAPI reagent (Thermo Fisher #P36962) was used to seal each sample and images were captured on the Zeiss Axioimager M1 Epifluorescence and Brightfield Microscope. CellProfiler v2.2.0 image analysis software (CellProfiler) was used to quantify IF signals.
+ Open protocol
+ Expand
10

Quantifying Proliferation in Primary Fibroblasts

Check if the same lab product or an alternative is used in the 5 most similar protocols
Primary fibroblasts were cultured with a diluted EdU reagent (Kaiji, Nanjing, China). The next day, PBS was used to wash the cells, and after fixation, Triton X-100 (Kaiji, Nanjing, China) was used to break the membrane and 5% goat serum was used to seal it. Then, the reaction solution was prepared according to the kit instructions and incubated for half an hour at room temperature. After the cells were rinsed with PBS three times, a DAPI reagent (Thermo Fisher Scientific, Waltham, MA, USA) was used to stain the nuclei. Finally, the cells were observed and photographed under an inverted fluorescence microscope.
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!