The largest database of trusted experimental protocols

9 protocols using cd86 clone gl 1

1

Detailed Immune Cell Profiling by Flow Cytometry

Check if the same lab product or an alternative is used in the 5 most similar protocols
Binding of the fusion protein was detected using PE-anti-human IgG Fc (clone HP6017,1 μg/ml). PD-L1 (clone 10 F.9G2, 1 μg/ml), IFNAR1 (clone MAR1-5A3, 1 μg/ml), CD45 (clone 30-F11, 0.5 μg/ml), CD80 (clone 16-10A1, 0.5 μg/ml), CD86 (clone GL1, 0.5 μg/ml) were from BioLegend or eBioscience. Cells suspended in FACS buffer (1% bovine serum albumin and 0.05% NaN3) were blocked with anti-CD16/32 (anti-FcγIII/ II receptor, clone 2.4G2) for 30 min and then stained with specific antibodies for 30 min on ice. Samples were analyzed on a FACS Calibur or Fortessa flow cytometer (BD Biosciences). Data were analyzed using FlowJo software (TreeStar).
+ Open protocol
+ Expand
2

Sorting and Sequencing Microglia from Embryonic Tissues

Check if the same lab product or an alternative is used in the 5 most similar protocols
Following single-cell suspension preparation, cells were pelleted and subsequently stained with fluorophore-conjugated antibodies against CD11b (clone M1/70), CD45 (clone 30-F11), CD45.1 (clone A20), CD45.2 (clone 104), CX3CR1 (clone SA011F11; BioLegend), F4/80 (clone BM8; BioLegend), Ly6C (clone HK1.4), Ly6G (clone 1A8; BioLegend), Gr-1 (clone RB6-8C5), CD115 (clone AFS98), MHC II (clone M5/114.15.2), CD11c (clone N418), CD64 (clone X54-5/7.1; BioLegend), CD86 (clone GL1; BioLegend), Tmem119 (clone 106–6; Abcam), and either DAPI or propium iodide viability dyes (all from eBioscience if not indicated otherwise). Flow cytometry was performed using a Fortessa analyzer (BD Biosciences), and FACS was performed using a FACS Aria II (BD Biosciences) or LSRII (BD Biosciences). The gating strategies used for flow cytometry analysis of embryonic tissues are adapted from Hoeffel et al. (2015) (link) and shown in Fig. S5. Resident microglia were sorted as doubletDAPICD11b+CD45int (Fig. S2 B). Flow cytometry data analysis was performed using FlowJo (TreeStar) software. For ULI RNA-seq, microglia were double-sorted to reach a purity of >98%, and 1,000 cells were sequenced.
+ Open protocol
+ Expand
3

Staining and Analyzing BMDCs

Check if the same lab product or an alternative is used in the 5 most similar protocols
BMDCs were harvested and stained using anti-mouse CD11c (clone N418; Biolegend), anti-mouse CD11b (clone M1/70; Biolegend), MHC class II I-Ab (clone AF6-120.1; Biolegend), CD86 (clone GL-1; Biolegend), CD40 (clone 3/23; Biolegend), and Zombie Fixable Viability dye (Biolegend) in PBS containing anti-mouse CD16/CD32 (clone 93; Biolegend). Cells were washed with FACS buffer (5% FBS, 1 mM EDTA, 0.01% NaN3 in PBS) and fixed using 1% paraformaldehyde (PFA, Electron Microscopy Services) in FACS buffer.
+ Open protocol
+ Expand
4

Dissociation and Staining of Murine Tumors

Check if the same lab product or an alternative is used in the 5 most similar protocols
After in vivo experiments, mouse tumors were rapidly excised and mechanically dissociated in PBS using scissors. The tumors were then digested in serum-free RPMI supplemented with 20 mg/ml DNase I (Roche), 20 mg/ml Dispase II (Roche) and 20 mg/ml collagenase I (Sigma) for 30–60 min at 37 °C with rotation to promote dissociation. The resulting single-cell suspensions were passed through 70 μM strainers twice, and red blood cells in the tumor samples were lysed with red blood cell lysis buffer (eBioscience, #00-4333-57) for 5 min at room temperature. Then, the single-cell suspensions were washed in Cell Staining Buffer (BioLegend) and incubated with the indicated flow antibodies at 4 °C for 30 min. Prior to staining with antibody panels, cells were blocked with a monoclonal antibody against CD16/32 (BioLegend) for 15 min at 4 °C. All the antibodies and reagents used for flow cytometry included ZombieRED (ECD, Biolegend, #423110), CD45 (clone 30-F11, Biolegend, #103116), CD3e (clone 145-2C11, Biolegend, #100328), CD4 (clone RM4-5, Biolegend, #100536), CD8 (clone 53–6.7, Biolegend, #100706), GZMB (clone QA16A02, Biolegend, #372208), PRF1 (clone S16009B, Biolegend, #154404), F4/80 (clone BM8, Biolegend, #123127), CD11b (clone M1/70, Biolegend, #101206), CD86 (clone GL-1, Biolegend, #105006) and CD206 (clone C068C2, Biolegend, #141719).
+ Open protocol
+ Expand
5

Comprehensive B Cell Immunophenotyping

Check if the same lab product or an alternative is used in the 5 most similar protocols
Bone marrow and spleen single cell suspensions were stained for dead cell exclusion using Live/Dead fixable violet dead cell staining kit (Invitrogen Life Technologies, Grand Island, NY). Surface markers were stained with a mixture of fluorochrome-conjugated antibodies, which included: CD19 (clone 6D5, BioLegend, San Diego, CA), B220 (clone RA3-6B2, eBioscience, San Diego, CA), CD138 (clone 281–2, BD bioscience, San Jose, CA), IgD (clone 11.26c.2a, BioLegend, San Diego, CA), IgM (clone II/41, eBioscience, San Diego, CA), IgG (eBioscience, San Diego, CA), MHC class II (clone 500A2, eBioscience, San Diego, CA), CD80 (clone I6-10A1, BD bioscience, San Jose, CA) CD86 (clone GL-1, BioLegend, San Diego, CA).
Fluorescence minus one (FMO) controls were included in each staining protocol and used to set specific gates (22 (link), 26 , 27 (link)). 6-peak validation beads were used for calibration during the time course analysis. Samples were run on a 12-color LSRII cytometer (BD bioscience, San Jose, CA) and analyzed by Flow Jo software (Tree Star Inc., Ashland, OR).
+ Open protocol
+ Expand
6

Differentiation and Activation of Dendritic Cells

Check if the same lab product or an alternative is used in the 5 most similar protocols
Hind limb bones (tibia and femur) were isolated shortly after the C57bl/6 male mice were euthanized. The bones were flushed with PBS using a 27 G needle and 5 mL syringe. Bone marrow was strained through a 70 µm nylon mesh filter (Fisher Scientific; Ottawa, ON, Canada) and mechanical pressure was applied using the plunger from a 5 mL syringe. Bone marrow cells were washed and red blood cells (RBC) lysed using filtered double distilled H2O (ddH2O) for 10 s. Cells were then counted and seeded onto a 24-well tissue culture plate at 1 × 106 cells/well in RPMI media supplemented with 5% FBS and 800 U/mL of GM-CSF (Peprotech, Cranbury, NJ, USA). Plates were incubated and the medium was changed every 2–3 days according to the pH indicator of the medium. After 7–9 days of incubation, the loosely attached cells were collected, washed in PBS, and plated at 1 × 106/mL/well in fresh medium with 20 × 106 CFU of HKCC in 24-well tissue culture plates. Supernatant was collected 18–20 h after incubation and frozen for ELISA. Whole cells were stained for CD11c, CD86 (clone GL-1), and CD40 (clone 3/23) with fluorescently labelled antibodies (BioLegend; San Diego, CA, USA). Dendritic cell populations were >80% pure, as determined by CD11c expression.
+ Open protocol
+ Expand
7

Comprehensive Immune Cell Profiling in Lungs

Check if the same lab product or an alternative is used in the 5 most similar protocols
Lung-infiltrating immune cells were stained with fluorochrome-coupled antibodies against mouse CD45 (clone 30-F11, BioLegend), CD3 (clone 17A2, BioLegend), CD4 (clone GK1.5, BioLegend), CD8 (clone 53–6.7, BioLegend), CD44 (clone IM7, BioLegend), CD62L (clone MEL-14, Biolegend), CD69 (clone H1.2F3, BioLegend), 4–1BB (CD137, clone 17B5, Biolegend), GITR (CD357, clone DTA-1, BioLegend), GZMB (clone GB11, BD Horizon), OX40 (CD134, clone OX-86, BioLegend), ICOS (clone 7E.17G9, BD OptiBuild), CD11b (clone M1/70, BioLegend), CD11c (clone N418, BioLegend), Ly-6G (clone 1A8, BioLegend), SiglecF (Clone E50–2440, BD Pharmingen), Ly-6C (clone HK1.4, BioLegend), Gr1 (Ly-6G/Ly-6C, clone RB6–8C5, BioLegend), CD103 (clone 2E7, BioLegend), F4/80 (clone BM8, BioLegend), CD80 (clone 16–10A1, BioLegend), CD86 (clone GL-1, BioLegend), IA/IE (clone M5/114.15.2, Biolegend) and CD206 (clone C068C2, BioLegend).
+ Open protocol
+ Expand
8

Comprehensive Flow Cytometry Antibody Panel

Check if the same lab product or an alternative is used in the 5 most similar protocols
For flow cytometry, Abs to CD16/CD32 (FcγRII/III; Clone 2.4G2), Ly6C (Clone AL-21), CD80 (Clone 16–10A1), IL-2 (Clone JES6–5H4), CD4 (Clone RM4–5), TNF (Clone MP6-XT22), CD62L (Clone MEL-14), NK1.1 (Clone PK136), B220 (Clone RA3–6B2), CD11b (Clone M1/70) and CD3ε (Clone 17A2) were purchased from BD PharMingen; IFNγ (Clone XMG1.2), CD49d (Clone R1–2), CD3ε (Clone 145–2C11), CD115, CD44 (Clone 1M7), CD86 (Clone GL-1) and I-A/I-E (Clone M5/114.15.2) were purchased from BioLegend; and CD11c (Clone N418), CD69 (Clone H1.2F3), CD3ε (Clone 145–2C11), Siglec H (Clone eBio440c), CD3ε (Clone 17A2), CD11b (Clone M1/70), Ly49H (Clone 3D10), Ly6C/6G (Gr-1; Clone RB6–8C5), CD11a (Clone M17/4) and CD28 (Clone 37.51) were purchased from eBioscience. The following Abs were purchased from Invitrogen: CD8α (Clone 5H10), F4/80 (Clone BM8) and CD45 (Clone 30-F11). For ELISA, purified mouse IgM, IgG1, IgG2b and IgG2c, and polyclonal nonconjugated and alkaline phosphatase (AP)-conjugated goat anti-mouse Ig isotypes were purchased from Southern Biotech.
+ Open protocol
+ Expand
9

Phenotypic Analysis of Co-stimulatory Molecules

Check if the same lab product or an alternative is used in the 5 most similar protocols
To detect the expression levels of co-stimulatory molecules on the cell surface of RAW-267.4 cells and BMDCs, fluorescein isothiocyanate (FITC)-conjugated rat anti-mouse CD40 (clone 3/23, Biolegend, San Diego, CA, USA), CD80 (clone 16-10A1, Biolegend, San Diego, CA, USA), CD86 (clone GL-1, Biolegend, San Diego, CA, USA), or MHC class II (I-A/I-E) mAbs (clone M5/114.15.2, Biolegend, San Diego, CA, USA) were used. In all stainings, IgG receptors on the cell surface were blocked using either monoclonal antibody (mAb) against CD16/CD32 (clone 2.4G2, Thermo Fisher Scientific, Waltham, MA, USA), or normal murine IgG antibodies (Santa Cruz Biotechnology, Dallas, TX, USA). BMDCs were additionally stained with allophycocyanin (APC)-conjugated anti-mouse CD11c mAb (clone N418, Biolegend, San Diego, CA, USA) to gate the DC population. Fluorescence intensity of stained cells (10,000 cell detection) was measured with flow cytometry using a FACSLyric (BD Bioscience, Franklin Lakes, NJ, USA). Data were analyzed using FlowJo V. 7 (BD Bioscience, Franklin Lakes, NJ, USA).
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!