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Pepmix

Manufactured by Bruker
Sourced in Germany

Pepmix is a peptide synthesis product line offered by Bruker. It provides a range of high-quality peptide synthesis reagents and building blocks for researchers conducting peptide-related studies and experiments.

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2 protocols using pepmix

1

MALDI-TOF Analysis of Bumble Bee Hemolymph

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Before MALDI-TOF analysis, the samples were thawed on ice and then centrifuged. A tenfold dilution was performed by adding 0.5 µL of bumble bee hemolymph to 4.5 µL of a 1% solution of TFA in a 0.5 mL LoBind Eppendorf® tube. For MALDI-MS analysis, the procedure used follows that of Houdelet et al. [36 (link)], with a minor modification. Briefly, the 10 fold diluted samples were deposited in three replicates on a MALDI plate (MTP 384 target plate polished steel BC, Bruker Daltonics) and vacuum-dried for 10 min. Once dried, the samples were covered with 1 μL of a fresh matrix solution (15 mg/mL 4-HCCA in 70% ACN, 2.5% TFA). Finally, the sample spots were lightly vacuum-dried before analysis. Calibration was carried out using 0.5 µL of APISCAL and 0.5 µL of Pepmix (Peptide Calibration Standard II, 700–3200 Da, Bruker Daltonics). APISCAL is an in-house calibration solution composed of two antimicrobial peptides from Apis mellifera, namely apidaecin (average m/z of 2109) and abaecin (average m/z of 3879); melittin (average m/z of 2847), the major venom component; and ETD151 (average m/z of 4839), a recombinant peptide. After drying under vacuum, the calibrants were covered with 1 μL of matrix. The plate was dried again before MALDI-TOF analysis.
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2

Optimized nanoESI-MS Infusion for Biomolecule Analysis

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For nanoESI-MS infusion experiments the PA800 plus system was coupled to a maxis 4G (Bruker Daltonics, Bremen, Germany). MS transfer parameters were optimized using the actual sample directly infused via the CE system using a pressure of 5 psi (340 mbar). MS parameters were optimized so that high m/z ions could be properly transferred to the TOF mass analyzer while avoiding fragmentation. Ion funnels RF were set at values of 300 Vpp and 400 Vpp. The electrospray voltage (capillary voltage) was typically ranging from -1.2 to -1.8 kV. Dry gas was set at 1.5 L/min and source temperature at 180°C. Data processing was performed with DataAnalysis 4.0 (Bruker Daltonics, Bremen, Germany). Deconvolution of the mass spectra was performed based on maximum entropy analysis using ESI Compass 1.3 Maximum Entropy Deconvolution Option in DataAnalysis 4.0. All spectra were calibrated by external calibration using Pepmix (Bruker Daltonics, Bremen, Germany) and cesium iodide (CsI) from Sigma-Aldrich (Saint-Louis, MO, USA).
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