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Monensin and brefeldin a

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Monensin and brefeldin A are laboratory reagents used in cell biology research. Monensin is a carboxylic ionophore that disrupts intracellular protein transport. Brefeldin A is a fungal metabolite that inhibits the function of the Golgi apparatus, affecting intracellular protein trafficking. These reagents are widely used to study cellular processes involving membrane trafficking and secretion.

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8 protocols using monensin and brefeldin a

1

Cytokine Production Profiling by Flow Cytometry

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Single cell suspensions prepared in complete medium (RPMI + 10% FBS + 1 mM Sodium pyruvate) were incubated with 50 nM phorbol 12, 13-dibutyrate (PDBu) and 0.5 μg/ml ionomycin (Sigma) for 4 h before further processing including measurement of cytokine production by flow cytometry or Flow-FISH.
For intracellular cytokine detection monensin and brefeldin A (eBioscience) were added during the last 2 h of the stimulation. Staining was done as described in the previous section and the following antibodies were used: anti-human TNF (clone Mab11, BD), anti-human IL-10 (clone JES3–19F1, Biolegend) and anti-bat IFN-γ (clone 2G645 (link), a kind gift from CSIRO) + F(ab’)2 anti-mouse IgG PE-conjugated (eBioscience) (Table S2).
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2

Flow Cytometry Analysis of Murine Splenocytes

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Mice splenocytes were incubated with Fc‐receptor blocking antibodies (2.4G2; BD Biosciences) for 10 min on ice to block non‐specific staining. For surface staining, fluorophore‐conjugated anti‐mouse antibodies were incubated in PBS containing 2% heat‐inactivated foetal bovine serum (Gibco, Carlsbad, California, USA) for 30 min. For staining of intracellular cytokines, whole splenocytes were stimulated with PMA and ionomycin (500 ng mL−1; eBioscience, San Diego, California, USA) in the presence of monensin and brefeldin A (1:1000; eBioscience) for 4 h at 37°C. Stimulated cells were washed twice after surface staining and permeabilised using Cytofix/Cytoperm (BD Bioscience) for 30 min at 4°C. Antibodies specific for intracellular cytokines were incubated with cells for 30 min at 4°C. Isotype controls were used as negative controls. To detect endogenous LCMV‐specific CD8+ T cells, APC‐conjugated H‐2Db‐gp33‐tetramer (MBL, TS‐M512‐P) was used. The stained cells were analysed using a BD LSRFortessa™ X‐20 (BD Bioscience) instrument and FlowJo software (TreeStar, Ashland, OR, USA).
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3

Intracellular Cytokine Staining Assay

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Spleen cell suspensions were cultured for 5h in RPMI 1640 medium (Gibco) supplemented with 10% heat-inactivated FBS (Gibco), 2 mM glutamine (Gibco), 55 μM 2-ME (Gibco), and 40 μg/ml gentamicin. Cells were stimulated with 2.5 μM TSKB20 (ANYKFTLV) peptide (Genscript Inc.) or 50 ng/mL PMA plus 1 μg/mL ionomycin (Sigma-Aldrich) in the presence of Monensin and Brefeldin A (eBioscience). Culture medium was used as negative control. Anti-CD107a was included during the culture period. After surface staining, cells were fixed and permeabilized using Intracellular Fixation & Permeabilization Buffer Set (eBioscience) following manufacturer’s instructions. Stained cells were acquired on a FACSCanto II (BD Biosciences) or a LSRFortessa X-20 (BD Biosciences) flow cytometer as before. Antibodies specifications are detailed in S1 Table.
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4

Spleen Cell Cytokine and Cytotoxicity Assay

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Spleen cell suspensions were cultured during 5 h with medium, 5 μg/ml TSKB20 (ANYKFTLV) peptide (Genscript Inc.), 50 nM PMA plus 0.5 μg/ml ionomycin (Sigma-Aldrich) in the presence of Monensin and Brefeldin A (eBioscience). When indicated a PE-labeled anti-CD107a mAb (eBioscience, eBio1D4B) was included during the culture period. After culture, the cells were surface stained, fixed and permeabilized with BD Cytofix/Cytoperm and Perm/Wash (BD Biosciences) according manufacturer's instruction. Cells were incubated with FITC-labeled antibodies to IFNγ (eBioscience, XMG1.2) or Perforin-1 (eBoscience, eBioOMAK-D), PerCP/PerCP-eFluor 710 labeled antibody to TNF (Biolegend, MP6-XT22) or Granzyme A (eBiosciences, GzA-3G8.5) and/or APC/AF647-labeled antibody to TNF (Biolegend, MP6-XT22) or Granzyme B (Biolegend, GB11). Stained cells were acquired on FACSCanto II (BD Biosciences).
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5

Flow Cytometry Analysis of Tumor-Infiltrating Immune Cells

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Tumors, blood, spleen, and draining lymph nodes were harvested from mice and processed for flow cytometry analysis as previously described (27) . For surface staining, tumor-infiltrating lymphocyte or immune cell suspensions were stained with antibodies and respective isotype antibodies in the presence of anti-CD16/32 (2.4G2) to block FcR. The list of flow cytometry antibodies used is described in table S6. To stain for Ki67 and FoxP3, samples were fixed and permeabilized with the FOXP3 Fixation/Permeabilization Kit (eBioscience). To measure intracellular cytokine staining, single-cell suspensions were incubated for 5 hours in complete RPMI with monensin and brefeldin A (eBioscience). Samples were then surface stained before being fixed/permeabilized (BD CytoFix/CytoPerm Kit) and stained with anti-IFN-, anti-TNF, and anti-IL-2. All data were collected on an LSR Fortessa (Becton Dickinson) flow cytometer and analyzed with FlowJo v10 software (Tree Star Inc.). Gating strategy is shown in figs. S4 and S8.
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6

Characterization of T cell kinetics post-viral vector

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For the characterisation of T cell kinetics after IV viral vector, freshly isolated PBMC were stimulated with anti-CD28 and anti-CD49d at 1μg/mL (Becton Dickinson), 200μg/mL of CD107a-PeCy5 (eBioscience) together with a pool of all 56 peptides of the T9/96 strain P. falciparum TRAP antigen (final concentration 5µg/mL) for 16-20 hours (32 (link)), 5μg/ml Staphylococcal enterotoxin B (SEB) (Sigma Aldrich) or media (unstimulated). Brefeldin A and monensin (eBioscience), both at 1 μg/mL, were added after two hours. For lymphocytes used in matched PBMC and FNA characterisation, no peptide stimulation was performed.
Following surface staining, fixation and intracellular staining (see Supplementary Materials and Methods for antibody list), acquisition was performed using an LSRII or LSRFortessa X-20 SORP (BD Biosciences). At least 500,000 events were acquired per sample, with data analysed on FlowJo version 10 (BD Biosciences). Lymphocytes were gated on live, size, and singlet (FSC-A vs FSC-H and FSC-A vs FSC-W) and dead cells (Live/Dead amine reactive+), monocytes (CD14+) and B cells (CD19+) were excluded. Cells were subsequently gated on CD45+ CD3+ CD8+ T cells.
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7

SARS-CoV-2 Spike-specific T-cell Immune Response

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Spike-specific CD4 and CD8 T-cell response was measured as previously described42 . Biobanked PBMCs were thawed in batches and re-suspended in cRPMI. Cells were incubated in the presence of SARS-CoV-2 spike peptide pools (Miltenyi PepTivator®SARS-CoV-2) at a concentration of 1 µg/mL and 5–10 × 106 cells/mL. After 4 h, protein transport inhibitor of brefeldin A and monensin (eBioscience) was added to each well and samples were incubated at 37 °C for a further 12 h.
Cells were then stained for cell surface markers (CD3 VioGreen 1:100 dilution, CD4 PE-Vio 770 1:100 dilution, CD8 PerCP-Vio700 1:100 dilution, CD69 VioBlue 1:100 dilution, (Miltenyi Biotec), PD-1 BV711 1:40 dilution (BioLegend) and “fixed”, permeabilised and stained for intracellular cytokines (IFNγ Alexa Flour 488 1:40 dilution (Biolegend) and TNFα APC 1:100 dilution (Miltenyi Biotec)). Multicolour flow cytometry was performed using Attune™ NxT Flow Cytometer. The gating strategy is shown in Supplementary Fig. 2.
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8

PMA and Ionomycin Stimulation of PBMCs

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PBMCs were stimulated for 3 hr with 150 ng/ml PMA + 1 μM ionomycin in RPMI plus brefeldin A and monensin (eBioscience), 2.5 μg/ml anti-CD107α, 1.25 μg/ml anti-CD107b (BD Bioscience), and 10 μM TAPI-2 (VWR International). Following stimulation, cells were resuspended in cytometry buffer (PBS + 0.05% sodium azide + 2 mM EDTA + 2% fetal calf serum) and stained with isotope-tagged antibodies before being acquired on the CyTOF. For the detailed protocol, see Newell et al. (2012 (link)) and the Supplemental Experimental Procedures.
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