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16 protocols using cd105 apc

1

Induction of Pyroptosis and IBD in Mice

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Lipopolysaccharides (LPS) (E. coli O111:B4) and nigericin (14K05-MM) used to induce pyroptosis were purchased from Invitrogen. Dextran sodium sulfate (DSS) (#118K7374V) used to induce inflammatory bowel disease (IBD) mouse model were obtained from Sigma-aldrich. Anti-mouse antibodies like NLRP3 (#AG-20B-0014, Adipogen), Caspase1-p20 (#AG-20B-0042, Adipogen), IL-1β (#12426, Cell Signaling Technology), GSDMDC1 (#sc-393656, Santa Cruz Biotechnology), alpha Tubulin (#66031-1-1 g, Proteintech), HRP goat anti-mouse IgG antibody (#EK010, Zhuangzhibio), and HRP goat anti-rabbit IgG antibody (#EK020, Zhuangzhibio) were used for immunoblot analysis. The anti-mouse antibodies used for flow cytometry analysis were as follows: APC-CD105 (#MJ7/18, Biolegend), APC-CD90 (#OX-7, BD), PE-CD44 (#IM7, BD, USA), PE-CD51 (#RMV-7, eBioscience), APC-CD3 (#17A2, Biolegend), APC-CD45R/B220 (#RA3-6B2, Biolegend), FITC-CD14 (#Sa14-2, Biolegend), FITC-CD11c (#117306, Biolegend), APC-CD11b (#101212, Biolegend) and APC-Gr1 (#17–5931, eBioscience). The IL-1β Enzyme-Linked Immunosorbent Assay (ELISA) kit was purchased from R&D Systems (#P16807).
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2

Characterizing Mouse Cell Surface Markers

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Antibodies used to characterize mouse cell surface makers by flow cytometry include: mouse PE/Cy7-CD41 (Cat# 25–0411-80) and APC-Gr1 (Cat# 17–5931-82) were purchased from eBioscience. Mouse PE-CD42b antibody (Cat# M040–3) was purchased from Emfret Analytics (Wurzburg, Germany). Antibodies for mouse APC-Ter119 (Cat# 116211), PE/Cy7-CD71 (Cat# 113811), FITC-Mac1 (Cat# 101205), APC/Cy7-cKit (Cat# 105825), FITC-Sca1 (Cat# 108105), PerCP/Cy5.5-FcγR (Cat# 101323), PE-CD150 (Cat# 115903), APC-CD105 (Cat# 120413) and PE-CD34 (Cat# 128609) were purchased from BioLegend (San Diego, CA). PE-Phospho-Stat5 (Cat# 5387) antibody was purchased from Cell Signaling (Danvers, MA). Rabbit polyclonal Von Willebrand Factor (VWF) antibody (Cat# A008229–5) used for immunohistochemistry was purchased from Agilent Technologies (Santa Clara, CA). Recombinant mouse stem cell factor (mSCF, Cat# 250–03), recombinant human EPO (hEPO, Cat# 100–64), recombinant mouse IL-3 (mIL-3, Cat# 213–13), recombinant human TPO (hTPO, Cat# 300–18), recombinant mouse Cxcl1 (mCxcl1, Cat# 250–01), and recombinant mouse Cxcl2 (mCxcl2, Cat# 250–15) were purchased from Peprotech (Rocky Hill, NJ).
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3

Hematopoietic Lineage Depletion and FACS Sorting

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BM suspensions were prepared as described above, and lineage-positive cells were depleted using a lineage depletion kit (eBioscience mouse hematopoietic lineage biotin panel; ThermoFisher Scientific) according to the manufacturer’s instructions. Briefly, BM derived from the femurs and tibiae of three mice was incubated with biotinylated antibodies against CD3, B220, Gr1, and Ter119 in a volume of 1 ml PBS/0.1% BSA for 10 min at 4°C. Cells were then washed and incubated with 0.4 ml streptavidin bound to magnetic beads (Magnisort beads; ThermoFisher Scientific) in a volume of 2 ml PBS/0.1% BSA in a FACS tube for 10 min at room temperature. The volume was then made up to 4 ml, and the FACS tube was placed inside a magnet for 10 min at room temperature. The fraction of cells not bound to the magnet was poured out and stained for FACS as described above.
Pre–CFU-Es and CFU-Es were sorted by FACS using a FACS ARIA III (BD) with 70-µm nozzle. For culture, cells were sorted into 0.5 ml IMDM medium with 5% FCS in a 5-ml FACS tube. For RT quantitative PCR (RT-qPCR), cells were sorted into 350 µl RLT buffer with β-mercaptoethanol in 1.5 ml tubes. The following staining panel was used for sorting: Sca-1-Pacific blue, PE-CD117, APC-CD105, PerCP Cy5.5-CD11b and Streptavidin (BioLegend), APC Cy7-CD16/32, PE Cy7-CD41, BV605-CD150.
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4

Immunoblot and Immunofluorescence Analysis of NLRP3 Inflammasome

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LPS (E. coli O111:B4) and nigericin (14K05-MM) were from Invitrogen. DSS (#118K7374V) were from Sigma-aldrich. Anti-mouse antibodies used for immunoblot analysis were: IL-1β (#12426, Cell Signaling Technologies), NLRP3 (#AG-20B-0014, Adipogen), Caspase-1 p20 (#AG-20B-0042, Adipogen), alpha Tubulin (#66031-1-1g, Proteintech), Caspase-11 p20 (#AG-20B-0061, Adipogen). Anti-mouse antibodies used for immunofluorescent staining analysis were: GSDMDC1 (#sc-393656, Santa Cruz Biotechnology), FITC Goat Anti-Mouse IgG Antibody (L146A, Gene Copoeia), AF647TM Goat Anti-Mouse IgG Antibody (L125A, Gene Copoeia). Anti-mouse antibodies used for flow analysis were: APC-CD45 (#30-F11, Biolegend), APC-Ter119 (#17-5921, eBioscience), PE-CD44 (#IM7, BD, USA), PE-CD51 (#RMV-7, eBioscience), APC-CD90 (#OX-7, BD), APC-CD105 (#MJ7/18, Biolegend), PE-CD146 (#P1H12, eBioscience), PE-CD166 (#105902, R&D), FITC-Sca-1 (#122505, Biolegend), APC-CD3 (#17A2, Biolegend), FITC-CD11c (#117306, Biolegend), APC-CD11b (#101212, Biolegend), APC-Gr1 (#17-5931, eBioscience), FITC-F4/80 (#123108, Biolegend), APC-CD19 (#17-5921, eBioscience), and FITC-CD14 (#Sa14-2, Biolegend).
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5

Pericyte Surface Marker Profiling

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We performed flow cytometry to confirm typical markers expressed by pericytes. Single cell suspensions of pericytes were stained for 30 min at room temperature (RT) using fluorescence-labelled antibodies for pericyte surface markers (488-NG2 from Invitrogen, APC PDGFR-β and APC CD105 from Biolegend) and DAPI for cell viability. Labelled cells were then washed in PBS + 1% BSA and were analyzed on a FACSCanto II flow cytometer (Becton Dickinson). Data analysis was performed using FlowJo software (Tree Star, v10).
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6

Multiparametric flow cytometry of MSCs

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Cytometric analysis was carried out on MACSQuant Analyzer (Miltenyi Biotec, Germany). Cells in passage 1 were stained with fluorescently-labeled antibodies against surface markers CD105-APC (BioLegend, USA), CD106-APC (BioLegend, USA), CD90-FITC (Miltenyi Biotec, Germany), CD146-FITC (Miltenyi Biotec, Germany), CD13-APC-Cy7 (BioLegend, USA), CD44-PacificBlue (Miltenyi Biotec, Germany), CD45-VioBlue (Miltenyi Biotec, Germany), CD14-FITC (eBioscience, USA), CD34-APC (Miltenyi Biotec, Germany) and CD31-Alexa405 (DRFZ, Germany) for 10 minutes on ice followed by a washing step prior to analysis. Labeling of cells with CFSE was carried out using the CellTrace CFSE Cell Proliferation Kit (invitrogen, Thermo Fisher Scientific).
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7

Transplantation of hiPSC-Derived NS/PCs

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The hiPSC-NS/PCs (NS/PC-B) were suspended in PBS containing 0.5% bovine serum albumin and 2 mM EDTA (pH 8.0) at 3.0 × 105 cells/50 μl and with fluorescent dye-conjugated antibodies for 30 min on ice in the dark: CD15-Brilliant Violet 421 (BioLegend, 323039), CD73-PE-Cy7, (BioLegend, 127224), and CD105-APC (BioLegend, 323208). 7-AAD (BD Biosciences, 559925) was also used for live/dead discrimination. An isotype control was used to subtract background fluorescence. Cell sorting was performed on FACSAria cell sorter (BD Biosciences), and the sorted cells were plated and cultured in AS200 in a Matrigel (Corning)-coated six-well plate (Greiner Bio-One). Intrastriatal transplantation into 9-week-old NOG mice (Clea Japan, In-Vivo Science Inc.) was performed as previously described9 (link). All mice were anesthetized and euthanized by transcardial perfusion of 0.1 M PBS containing 4% PFA at 7–10 weeks after the transplantation. The dissected brains were further fixed in 4%PFA for 24 h and processed for immunohistochemical analysis.
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8

Decidual Cell Characterization by FACS

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The decidual unsorted cells (dUCs; including dCD34+ and dCD34 cells) were collected and labelled with the following antibodies for dual staining: CD34‐FITC (BD, Franklin Lakes, NJ, USA)/ c‐kit‐PE (BD) for 30 minutes at 4°C. The dCD34+ cells were stained with CD34‐FITC (BD), c‐kit‐PE (BD), CD90‐FITC (BioLegend, San Diego, CA, USA), CD105‐APC (BioLegend), CD31‐FITC (BD), VEGFR‐2‐FITC (BD), VE‐cadherin‐FITC (BD), HLA‐ABC‐FITC (Abcam) and HLA‐DR‐FITC (Abcam). Then, the cells were washed three times with cold PBS before being centrifuged at 1000 rpm for 5 minutes. Immunoreactivity of the cell surface antibody markers was assayed by fluorescence‐activated cell sorting (FACS; BD).
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9

Characterization of Dental and Bone Marrow Stem Cells

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DPSCs and aBMMSCs were characterized for mesenchymal (CD90, CD73, CD49f, CD146, STRO-1), endothelial (CD105), hematopoietic (CD45, CD34, CD117/c-kit) and embryonic (SSEA-1, SSEA-3, SSEA-4) stem cell (SC) markers at p.2–3, p.6–7 and p.10–11 by flow cytometry, as described previously [26 (link)], using the following fluorochrome-conjugated mouse anti-human antibodies: CD90-fluorescein isothiocyanate (FITC), CD73-phycoerythrin (PE), CD34-allophycocyanin (APC), STRO-1-FITC, CD146-PE, CD49f-APC, CD105-APC, SSEA-1-PE, SSEA-3-PE, SSEA-4-FITC, CD117-Peridinin-Chlorophyll-Protein-cyanin 5.5 (PerCP-Cy5.5) and CD45-PE (all BioLegend, Fell, Germany). Analysis was performed by means of a Guava® easyCyte 8HT Benchtop Flow Cytometer (Merck Millipore, Billerica, MA, USA). A total of 50,000 events were acquired for each sample. Data were analyzed using GuavaSoft 3.1.1 and Summit 5.1 software. In addition to determining the percentage of cells positive for each marker, the cell size and cell internal complexity (granularity) distribution profiles were analyzed by forward scatter (FSC) vs side scatter (SSC) fluorescence intensity plots, respectively.
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10

Fluorescent Antibody Staining for Cell Sorting

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Cells were suspended in PBS containing 0.5% bovine serum albumin and 2 mM EDTA (pH 8.0) at 3.0 × 105 cells/50 μl and stained for 30 min on ice in the dark with fluorescent dye-conjugated antibodies: PSA-NCAM (Millipore, MAB5324; 1:50), PSA-NCAM-APC (Miltenyi Biotec, 130-093-273; 1:50), CD133-APC (Miltenyi Biotec, 130-090-826; 1:50), CD15-Brilliant Violet 421 (BioLegend, 323039; 1:50), CD49α-FITC (BioLegend, 328308; 1:50), CD73-PE-Cy7, (BioLegend, 127224; 1:50), and CD105-APC (BioLegend, 323208; 1:50). In addition, 7-AAD (BD Biosciences, 559925; 1:1000) was applied for live/dead discrimination. An isotype control was used to subtract background fluorescence. Flow cytometric analysis was performed on a FACSVerse flow cytometer (BD Biosciences). Cell sorting was performed on the FACSAria cell sorter (BD Biosciences). Data were analyzed using FlowJo, version 7.6. The gating strategies are shown in Supplementary Fig. 13.
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